Gene detail

Gene detail information of Glyur007065s00044534

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26880.1	5.00E-44	Ribosomal protein L34e superfamily protein
NR	NP_001236831.1	9.28E-57	uncharacterized protein LOC100305798 [Glycine max]
COG	YP_006362913.1	1.00E-06	50S ribosomal protein L34e [Thermogladius cellulolyticus 1633]
Swissprot	tr\|P40590\|RL34_PEA	7.00E-57	60S ribosomal protein L34
trEMBL	tr\|C6SWN5\|C6SWN5_SOYBN	3.00E-57	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G37360.1}

Sequence

Transcript Sequence

>Glyur007065s00044534.1
GGAGGTCATGGGTTGAGTCATGGAATTAGCCTTTTGTAAATGCATTCTAAGAGACTAAGACTCTCTACTATAGATTCGTAATGGGTCTGAACCTTCCCTTGACCGCACTATGGCTGAAGTTTTATAGCACCAGGTTTGCAGGTTGTCTTTTGGGGTTTACTGGCAGTCTTAAACAACTAAATTCAGCTAATGTGTACTGATGATTTAAGGCACATCTGATGAATATATTGCACAGTTATACTACAGGATCCGACCCTTCCCTGCCTAGTACTTTTCTTCTTGCCTGTTATCCATATATATTTTCTTCAAAATTTTCGTCTCTCATTTCTCCCTTGATCTTCTTCTTTGGTAATACATAACCTGAACTTTTTTATCCACCAGTGATGTGTCCTCTTTAAGTTTTCATGTTCTTTCTGTCTGTCTATCCCCTCTTTCCTACCAAGTAGATCAGTGTTGCTTCTCCTATCATGATTTTCTGATGCACAGACTTTATCTACAGATTCCACACTTAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGCAGGACAGTAAACCGGGCATATGGAGGTGTATTATCTGGAGGAGCTGTTAGAGAAAGGATTATCCGGGCTTTCCTTGTTGAAGAGCAAAAAATTGTAAAGAAGTTTAGATTTTGTTACAAGTTATCGGATTCTGTTGTTCCAGTGCTTCTAGGTTTCACTGCCACCACCATCATCATGGTGCAAAGGCTCACATATCGTAAGCGGCATAGTTATGCCACCAAATCAAACCAGCACCGGGTTGTTAAGACCCCTGGTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGCGGACCTAAGTGCCCTGTCACTGGGAAGAGGATCCAAGGGATTCCACACTTAAGACCTGCTGAATACAAGAGGTCTAGATTGCCTCGGAACCGTCGGACAGTAAACCGTGCATATGGAGGTGTATTATCTGGAGGAGCTGTTAGAGAAAGGAATTTCCCTGTGCCAAAATTCACCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07065	577	4158	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007065s00044534.1	PF01199.13	Ribosomal_L34e	8	50	3.70E-10
Glyur007065s00044534.1	PF01199.13	Ribosomal_L34e	84	173	7.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.358
SRR1783600	control	10.545
SRR1783602	moderate drought stress	11.460
SRR1811619	moderate drought stress	11.749

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.188
DRR006520	Root Summer glycyrrhizin high producing strain	22.971
DRR006521	Root Winter glycyrrhizin high producing strain	12.339
DRR006522	Root Winter glycyrrhizin high producing strain	13.290
DRR006523	Root Summer glycyrrhizin low producing strain	20.684
DRR006524	Root Summer glycyrrhizin low producing strain	20.866
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.238
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.565

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.966
SRR2868004	Drought Stress (root)	10.701
SRR2967015	Control (root)	8.531

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.094
SRR9715740	Leaf	10.089
SRR9715741	Leaf	7.687
SRR9715739	Root	2.059
SRR9715742	Root	5.040
SRR9715743	Root	3.558

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.245
SRR8749028	MeJA induced 9h	15.072
SRR8749029	MeJA induced 9h	28.866
SRR8749030	Uninduced	4.075
SRR8749031	Uninduced	2.949
SRR8749032	Uninduced	5.212

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.752
SRR8400027	Control - Root	12.717