Gene detail

Gene detail information of Glyur007039s00046701.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G39950.1	1.00E-154	cytochrome P450, family 79, subfamily B, polypeptide 2
NR	Q6J540.1	0	RecName: Full=Isoleucine N-monooxygenase 2; AltName: Full=Cytochrome P450 79D4 [Lotus japonicus]
COG	YP_003950164.1	3.00E-20	cytochrome p450 [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q6J540\|C79D4_LOTJA	0	Isoleucine N-monooxygenase 2
trEMBL	tr\|A0A072V898\|A0A072V898_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:KEH34365.1}

Sequence

Transcript Sequence

>Glyur007039s00046701.1
ATGGACTATGGCCTTTGTTTTTTCCANTCATATCTTCAATCCTTTTGGATTTCTTTATTTATTGTGACTTTTGTCTTTATGATTATCAAAANCCTAACTCTGAAACCCGAGAGTTCCAAATTTCCCCCGGGTCCCAAACCATGGCCTGTAGTTGGTAATCTTCCTGAAATGCTTGCAAACCAGCCTGTGTTTCGGTGGATACATGAGATATTGGAAGAAATGAACACTGAAATAGCATGTATCCGCCTAGGAAATGTCCATGTGATCCCTGTGAGTTGCCCCACCCTTGCTTGTGAGTTCTTGAAAACACATGATGCTGCTTTTGCATCTAGACCACTAACCATGGCCACCGATATTATTAGCGACGGTTATTTGACAACAACGGTTGCACCCNTTGGGGAGCAACAGAAGAAAATGAAGAAAATGGTTGTCGATCATTTGCTCTCCCCATTTAGGGATCAATGCCTCCTAGACAAAAGGAATGAAGAAGCTGATAACCTTATGTTTTATGTCTACAACAATGTGAAAGATAATGGTGGCCTTGTGAATGTTAGGATTGCTGCACGACATTATTGTGGTAATTTGGTTANGAAACTGACCTTTAATACAAGGTACTTTGGAAAGGGTGGGAAAGATGGAGGGCCTGGTTTTGAGGAAGTGGAACATGTAGATGCCGCTTTCACATTGCTCAGATACGCTTTTGCCTTCTGTGTGTCTGATTATATCCCATGCTTGAGGAGGCTTGACTTGGATGGCCACAAGAGCAAGGTAAAAAACGCAATGAGGATAGTGNAGAAGTATCATGATCCCATCATTGAAGATAGAATCAAACGATGGAGTAATGGATCAAAGACGACAGTTGAGGACTGGCTGGATGCTCTGATATCAGCGAAAGATGAATTGCTGCTTGCAATGTTGGATAATCCATCAAATGCTTTTGAATGGGCACTGGCAGAAATGATAAATCAACCTAAGTTGCTTCAACAAGCCACAGAAGAATTGGACAATGTAGTTGGAAAAAATAGGTTGGTTCAAGAGTCAGATATTCCTAAGCTCAACTTTGTGAAGGCATGTGCAAGAGAAGCTTTACGCCTACATCCTGTATCGCCTTTCACTGTACCCCATGTCTCTATGAGTGACACAATAGTTGGGAATTACTTGATTCCAAAGGGTAGCCATGTACTGCTAAGTAGAATTGGTCTCGGGAGGAACTCAAAAGTTTGGACTGAACCCCTCAAGTTCAAACCAGAACGCCATCTCAGTAATATTATTGATGGGTCATCATCTTATAATAATATAGCTTTGACGGAGCCAGATTTGAGGTTCATATCCTTTAGCACGGGTAGGCGTGGTTGTCCTGGTGCGACGCTTGGCACCACAATGATTATAATGTTGTTTGCTAGATTGCTCCACGGCTTCACTTGGAGTGCAGCTCCCAACGTATCAAGCATCAATCTTGCTGAGTCCAAAGGGGATCTGTTCCTTGCTGAGCCACTTGTGGTAGTAGCAAAGCCAAGATTAGCAGCAGAACTATACAACATAAAAGAGTGATGAAGCAATAAATAATATTCAGTTAAATAAGGTGGTGACTAATGAATCACCAAATAAAAGAGTGATATGTCTTGGCTGGGTTTTGGGTTGATAAAAATACCCTTTGAGACTGGTGGGTTTCTGGGGTATATCTTGGTATTTGACTAGAACCCTTTGAGACCATGTAGGTCACTNAGGCGTTACCTTATAACTTCGGTTTACCTTAGTTTACAGTGTGAAGGTGTGAAGTTGTATCTTGGGTGTTGGGGTCTTTCTTTTTGTGAGTTTTTGAACACTATTATGTATCGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold07039	879	4248	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP79B2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12153	CYP79A2	EC:1.14.13.124	2-Oxocarboxylic acid metabolism	map01210
			Cyanoamino acid metabolism	map00460
			Glucosinolate biosynthesis	map00966

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur007039s00046701.1	PF00067.17	p450	42	490	5.20E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.546
SRR1783600	control	2.535
SRR1783602	moderate drought stress	2.980
SRR1811619	moderate drought stress	2.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.162
DRR006520	Root Summer glycyrrhizin high producing strain	6.965
DRR006521	Root Winter glycyrrhizin high producing strain	0.120
DRR006522	Root Winter glycyrrhizin high producing strain	0.117
DRR006523	Root Summer glycyrrhizin low producing strain	6.868
DRR006524	Root Summer glycyrrhizin low producing strain	6.843
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.988
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.975

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.519
SRR2868004	Drought Stress (root)	4.619
SRR2967015	Control (root)	4.569

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.510
SRR9715740	Leaf	0.034
SRR9715741	Leaf	0.449
SRR9715739	Root	0.363
SRR9715742	Root	2.545
SRR9715743	Root	2.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.202
SRR8400027	Control - Root	1.435