Gene detail information of Glyur007025s00044667 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23060.1 | 1.00E-47 | IQ-domain 22 |
| NR | KEH31712.1 | 0 | calmodulin-binding protein [Medicago truncatula] |
| Swissprot | tr|Q8L4D8|IQD31_ARATH | 9.00E-13 | Protein IQ-DOMAIN 31 |
| trEMBL | tr|A0A072UPT6|A0A072UPT6_MEDTR | 0 | Calmodulin-binding protein {ECO:0000313|EMBL:KEH31712.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07025 | 531 | 4624 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007025s00044667.1 | PF00612.22 | IQ | 105 | 124 | 3.30E-05 |
| Glyur007025s00044667.1 | PF00612.22 | IQ | 130 | 144 | 0.19 |
| Glyur007025s00044667.1 | PF13178.1 | DUF4005 | 337 | 427 | 5.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.236 |
| SRR1783600 | control | 10.303 |
| SRR1783602 | moderate drought stress | 7.296 |
| SRR1811619 | moderate drought stress | 7.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.167 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.317 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.282 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.790 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.848 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.640 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.440 |
| SRR2868004 | Drought Stress (root) | 6.581 |
| SRR2967015 | Control (root) | 9.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.336 |
| SRR9715740 | Leaf | 0.479 |
| SRR9715741 | Leaf | 4.235 |
| SRR9715739 | Root | 0.748 |
| SRR9715742 | Root | 7.536 |
| SRR9715743 | Root | 5.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 70.503 |
| SRR8749028 | MeJA induced 9h | 34.398 |
| SRR8749029 | MeJA induced 9h | 32.172 |
| SRR8749030 | Uninduced | 5.985 |
| SRR8749031 | Uninduced | 5.912 |
| SRR8749032 | Uninduced | 8.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.988 |
| SRR8400027 | Control - Root | 10.854 |