Gene detail information of Glyur007019s00047859 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56710.1 | 1.00E-04 | sigma factor binding protein 1 |
| NR | XP_007147197.1 | 2.54E-20 | hypothetical protein PHAVU_006G103800g [Phaseolus vulgaris] |
| trEMBL | tr|V7BRJ8|V7BRJ8_PHAVU | 9.00E-21 | Uncharacterized protein {ECO:0000313|EMBL:ESW19191.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold07019 | 2026 | 2421 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur007019s00047859.1 | PF05678.9 | VQ | 23 | 41 | 3.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.376 |
| SRR1783600 | control | 0.342 |
| SRR1783602 | moderate drought stress | 1.549 |
| SRR1811619 | moderate drought stress | 1.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.724 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.143 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 41.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.391 |
| SRR2868004 | Drought Stress (root) | 16.715 |
| SRR2967015 | Control (root) | 14.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.733 |
| SRR9715740 | Leaf | 5.744 |
| SRR9715741 | Leaf | 6.498 |
| SRR9715739 | Root | 0.050 |
| SRR9715742 | Root | 0.393 |
| SRR9715743 | Root | 0.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.090 |
| SRR8749028 | MeJA induced 9h | 0.127 |
| SRR8749029 | MeJA induced 9h | 0.192 |
| SRR8749030 | Uninduced | 2.357 |
| SRR8749031 | Uninduced | 1.119 |
| SRR8749032 | Uninduced | 2.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.841 |
| SRR8400027 | Control - Root | 1.188 |