Gene detail information of Glyur006942s00047285.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11590.1 | 5.00E-17 | Integrase-type DNA-binding superfamily protein |
| NR | XP_010049108.1 | 2.84E-33 | PREDICTED: ethylene-responsive transcription factor TINY-like [Eucalyptus grandis] |
| Swissprot | tr|Q9LYD3|DREB3_ARATH | 9.00E-35 | Dehydration-responsive element-binding protein 3 |
| trEMBL | tr|B9RRY3|B9RRY3_RICCO | 2.00E-34 | Transcriptional factor TINY, putative {ECO:0000313|EMBL:EEF45843.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06942 | 550 | 831 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006942s00047285.1 | PF00847.15 | AP2 | 2 | 44 | 8.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.226 |
| SRR1783600 | control | 0.271 |
| SRR1783602 | moderate drought stress | 0.641 |
| SRR1811619 | moderate drought stress | 0.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.872 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.791 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.471 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.195 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.067 |
| SRR2868004 | Drought Stress (root) | 0.006 |
| SRR2967015 | Control (root) | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.006 |
| SRR9715742 | Root | 0.364 |
| SRR9715743 | Root | 0.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.096 |
| SRR8400027 | Control - Root | 0.079 |