Gene detail information of Glyur006906s00040868 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26932.2 | 6.00E-07 | dsRNA-binding protein 3 |
| NR | XP_009346245.1 | 3.16E-16 | PREDICTED: uncharacterized protein LOC103937986 [Pyrus x bretschneideri] |
| Swissprot | tr|Q9LJF5|DRB3_ARATH | 8.00E-08 | Double-stranded RNA-binding protein 3 |
| trEMBL | tr|K7LA23|K7LA23_SOYBN | 3.00E-16 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G42580.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06906 | 2835 | 4867 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006906s00040868.1 | PF00035.20 | dsrm | 5 | 58 | 1.30E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.720 |
| SRR1783600 | control | 5.541 |
| SRR1783602 | moderate drought stress | 15.673 |
| SRR1811619 | moderate drought stress | 14.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.961 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.429 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.334 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.535 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.685 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.577 |
| SRR2868004 | Drought Stress (root) | 1.830 |
| SRR2967015 | Control (root) | 1.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.806 |
| SRR9715740 | Leaf | 5.857 |
| SRR9715741 | Leaf | 6.872 |
| SRR9715739 | Root | 0.994 |
| SRR9715742 | Root | 2.334 |
| SRR9715743 | Root | 1.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.375 |
| SRR8749028 | MeJA induced 9h | 2.172 |
| SRR8749029 | MeJA induced 9h | 0.579 |
| SRR8749030 | Uninduced | 3.620 |
| SRR8749031 | Uninduced | 1.534 |
| SRR8749032 | Uninduced | 4.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.826 |
| SRR8400027 | Control - Root | 5.014 |