Gene detail information of Glyur006859s00047760 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00210.1 | 5.00E-39 | LOB domain-containing protein 31 |
| NR | ACJ85221.1 | 3.18E-59 | unknown [Medicago truncatula] |
| Swissprot | tr|O81322|LBD31_ARATH | 9.00E-50 | LOB domain-containing protein 31 |
| trEMBL | tr|B7FKD7|B7FKD7_MEDTR | 1.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:AFK48871.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06859 | 685 | 999 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006859s00047760.1 | PF03195.9 | DUF260 | 14 | 101 | 3.70E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.509 |
| SRR1783600 | control | 0.218 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.577 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.756 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.295 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.984 |
| SRR2868004 | Drought Stress (root) | 1.863 |
| SRR2967015 | Control (root) | 2.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.176 |
| SRR8749028 | MeJA induced 9h | 47.745 |
| SRR8749029 | MeJA induced 9h | 29.932 |
| SRR8749030 | Uninduced | 8.436 |
| SRR8749031 | Uninduced | 1.841 |
| SRR8749032 | Uninduced | 10.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.542 |
| SRR8400027 | Control - Root | 0.513 |