Gene detail information of Glyur006852s00045260 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18250.1 | 2.00E-105 | Pathogenesis-related thaumatin superfamily protein |
| NR | XP_004503284.1 | 4.03E-157 | PREDICTED: thaumatin-like protein-like [Cicer arietinum] |
| Swissprot | tr|P50699|TLPH_ARATH | 7.00E-133 | Thaumatin-like protein (Precursor) |
| trEMBL | tr|I1KQK1|I1KQK1_SOYBN | 1.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G05820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06852 | 2549 | 4509 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006852s00045260.1 | PF00314.12 | Thaumatin | 39 | 251 | 2.10E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.024 |
| SRR1783600 | control | 42.748 |
| SRR1783602 | moderate drought stress | 25.434 |
| SRR1811619 | moderate drought stress | 25.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.366 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.537 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.139 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.226 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 46.225 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 106.596 |
| SRR2868004 | Drought Stress (root) | 39.770 |
| SRR2967015 | Control (root) | 50.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.315 |
| SRR9715740 | Leaf | 15.608 |
| SRR9715741 | Leaf | 8.035 |
| SRR9715739 | Root | 69.415 |
| SRR9715742 | Root | 18.569 |
| SRR9715743 | Root | 24.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.322 |
| SRR8749028 | MeJA induced 9h | 4.205 |
| SRR8749029 | MeJA induced 9h | 6.931 |
| SRR8749030 | Uninduced | 1.238 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 71.301 |
| SRR8400027 | Control - Root | 52.091 |