Gene detail

Gene detail information of Glyur006846s00042569

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19450.1	8.00E-73	Major facilitator superfamily protein
NR	XP_004499162.1	2.31E-95	PREDICTED: sugar transporter ERD6-like 6-like [Cicer arietinum]
COG	YP_002426707.1	1.00E-17	sugar transporter family protein [Acidithiobacillus ferrooxidans ATCC 23270]
Swissprot	tr\|Q93YP9\|ERDL4_ARATH	1.00E-86	Sugar transporter ERD6-like 4
trEMBL	tr\|A0A061FDK5\|A0A061FDK5_THECC	1.00E-95	Major facilitator superfamily protein isoform 2 {ECO:0000313\|EMBL:EOY14777.1} (Fragment)

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06846	1727	5091	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006846s00042569.1	PF00083.19	Sugar_tr	52	162	2.80E-14
Glyur006846s00042569.1	PF00083.19	Sugar_tr	171	268	2.50E-22

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.791
SRR1783600	control	1.790
SRR1783602	moderate drought stress	1.246
SRR1811619	moderate drought stress	1.119

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.812
DRR006520	Root Summer glycyrrhizin high producing strain	0.661
DRR006521	Root Winter glycyrrhizin high producing strain	0.596
DRR006522	Root Winter glycyrrhizin high producing strain	0.406
DRR006523	Root Summer glycyrrhizin low producing strain	0.973
DRR006524	Root Summer glycyrrhizin low producing strain	1.066
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.341
SRR2868004	Drought Stress (root)	10.703
SRR2967015	Control (root)	10.366

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.149
SRR9715740	Leaf	0.676
SRR9715741	Leaf	0.316
SRR9715739	Root	2.629
SRR9715742	Root	3.491
SRR9715743	Root	5.309

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.458
SRR8749028	MeJA induced 9h	2.772
SRR8749029	MeJA induced 9h	0.175
SRR8749030	Uninduced	1.279
SRR8749031	Uninduced	0.937
SRR8749032	Uninduced	1.160

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.510
SRR8400027	Control - Root	5.932