Gene detail information of Glyur006835s00046692


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G28980.22.00E-65CDK-activating kinase 1AT
NRXP_004503449.11.17E-97PREDICTED: cyclin-dependent kinase F-1-like [Cicer arietinum]
COGYP_007563291.18.00E-19putative serine/threonine protein kinase [Ilumatobacter coccineus YM16-304]
Swissprottr|O80345|CDKF1_ARATH2.00E-78Cyclin-dependent kinase F-1
trEMBLtr|G7L878|G7L878_MEDTR4.00E-94Cyclin-dependent kinase {ECO:0000313|EMBL:AET05246.2}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0683529880-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.2


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur006835s00046692.1PF00069.20Pkinase231635.70E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control63.661
SRR1783600control61.958
SRR1783602moderate drought stress103.821
SRR1811619moderate drought stress102.376

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.533
DRR006520Root Summer glycyrrhizin high producing strain32.470
DRR006521Root Winter glycyrrhizin high producing strain34.398
DRR006522Root Winter glycyrrhizin high producing strain34.227
DRR006523Root Summer glycyrrhizin low producing strain47.413
DRR006524Root Summer glycyrrhizin low producing strain47.910
DRR006525Leaf Summer glycyrrhizin high producing strain12.460
DRR006526Leaf Summer glycyrrhizin high producing strain11.850

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)34.427
SRR2868004Drought Stress (root)42.752
SRR2967015Control (root)55.464

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf12.781
SRR9715740Leaf14.116
SRR9715741Leaf16.238
SRR9715739Root29.831
SRR9715742Root34.086
SRR9715743Root32.421

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.292
SRR8749028MeJA induced 9h46.717
SRR8749029MeJA induced 9h21.756
SRR8749030Uninduced18.975
SRR8749031Uninduced15.729
SRR8749032Uninduced26.466

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root49.148
SRR8400027Control - Root46.502

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved