Gene detail

Gene detail information of Glyur006833s00045930

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G60500.1	7.00E-154	Dynamin related protein 4C
NR	XP_003629868.1	0	Interferon-induced GTP-binding protein Mx [Medicago truncatula]
Swissprot	tr\|Q9ZP55\|DRP4C_ARATH	0	Dynamin-related protein 4C
trEMBL	tr\|G7L7C1\|G7L7C1_MEDTR	0	Dynamin 4C-like protein {ECO:0000313\|EMBL:AET04344.1}

Sequence

Transcript Sequence

>Glyur006833s00045930.1
ATGGGAAATCAAAGTGCTACCGATGCCACTGTGTCTGTGAATCCACCTGATGAATCACTTGCACTAATCCATGCAGAAGAGCAGCCTCAACCCCTTGCAGTTGCACCAATAGTGTCTTCTTACAATGAGAAGATACGTCCAGTTCTTGATGCCCTTGAGAATCTAAGGCGCCTCAACATTGCCAAAGAGGGAATACAGCTTCCGACCATTGTTGTTGTTGGAGACCAATCCTCTGGGAAATCCAGTGTCCTTGAATCGCTTGCTGGTATTAGCTTGCCACGTGGAGAAGGAATTTGCACCAGGTACAATGGCAAGAATGTTTCCACTGATGAAGCACATGTCTCTGATGCCATAAACACTGCCACAGAAGAGCTTGCTGGTTCTGGGAAAGGGATTCGCAACACCCCATTGAGTTTGGTGGTGAAGAAAAATGGTGTTCCTGACTTAACCATGGTTGATCTTCCTGGGATTACTCGTGTGCCTGTTCACGGCCAACCTGATAATATCTATGACCAGATTAAAGATATGATCATGGAGTACATTACACCAGAAGAGAGCATCATTCTGAATGTTCTTTCTGCTACTGTTGATTTCACTACTTGTGAGTCCATAAGGATGTCACAGAGTGTTGATAAGACTGGGTTGAGGACACTGGCTGTGGTCACAAAGGCTGATAAGTCTCCTGAAGGCTTGTTGGAAAAGGTTACTGCTGATGATGTCAACATTGGTCTTGGTTATGTCTGTGTGAGAAACCGCATTGGTGAAGAGTCCTATGAAGATGCAAGGAAAGTGGAGAAAAAGCTTTTTGAGTCTCACCCACTTCTTTCCAAAATTGATAAGTCCATTGTTGGTATTCCAATTTTGGCTCAAAAGCTGGTTCAGGTTCAGGCTATGATTATTTCCAAAACTCTGCCAGAGATTGTGAAGAAGATCAGTGAGAAGCTTGATAATAATTTAGCCGAGTTAAATAAACTTCCTGCTAACTTGACTTCTGTTGCTGATGCTATGTCCACTCTCGTGCATATTGTTGGTTTGTCTAGAGATTCTCTTAGAAAGATTCTTGTCGTTGGAGATTTTGAGGAGTACCCTGAAGAAAAGCACATGCATTGCACTGCTCGGTTGGTTGAGATTCTTGAATCGTTCTCTAGTGATCTTCACAACTGTGCAGAAAGTGATGCCACAAAGGATTTTCTTATGGAGGAGATAATGGTGCTTGGGGAAGCCAAATCCTTTGTTCTACCAAATTTCATACCCAGAACTGCTTTCCTTACTATACTGCAGAGGAAAGTGAAAGGAATTTCAACGATGCCAATAACTCTGGTCGTTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06833	133	1521	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006833s00045930.1	PF00350.18	Dynamin_N	70	101	7.70E-10
Glyur006833s00045930.1	PF00350.18	Dynamin_N	108	224	5.20E-20
Glyur006833s00045930.1	PF01031.15	Dynamin_M	239	439	6.10E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.252
SRR1783600	control	3.304
SRR1783602	moderate drought stress	5.017
SRR1811619	moderate drought stress	4.801

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.637
DRR006520	Root Summer glycyrrhizin high producing strain	3.956
DRR006521	Root Winter glycyrrhizin high producing strain	2.303
DRR006522	Root Winter glycyrrhizin high producing strain	2.356
DRR006523	Root Summer glycyrrhizin low producing strain	4.747
DRR006524	Root Summer glycyrrhizin low producing strain	5.209
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.230
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.335

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.687
SRR2868004	Drought Stress (root)	9.406
SRR2967015	Control (root)	10.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.857
SRR9715740	Leaf	3.496
SRR9715741	Leaf	3.712
SRR9715739	Root	1.184
SRR9715742	Root	3.347
SRR9715743	Root	3.390

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.224
SRR8749028	MeJA induced 9h	4.014
SRR8749029	MeJA induced 9h	3.526
SRR8749030	Uninduced	2.423
SRR8749031	Uninduced	3.668
SRR8749032	Uninduced	2.333

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.764
SRR8400027	Control - Root	8.911