Gene detail

Gene detail information of Glyur006800s00044206

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47780.1	2.00E-143	ABC2 homolog 6
NR	XP_004508761.1	0	PREDICTED: ABC transporter A family member 7-like isoform X3 [Cicer arietinum]
COG	YP_003997569.1	3.00E-21	ABC transporter related protein [Leadbetterella byssophila DSM 17132]
Swissprot	tr\|Q8LPK0\|AB8A_ARATH	3.00E-171	ABC transporter A family member 8
trEMBL	tr\|V7B008\|V7B008_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10198.1}

Sequence

Transcript Sequence

>Glyur006800s00044206.1
TAGGAATCGGGCTTTTAAATAGGCTAAAAAGCCAAATCAGGTTTTTAAAAATGGCAGGCCGGGTCTAAAAAAAAGCCTATGACAGGTAATAGGCCAGACTTAGGCTTTAATAATTTTAGACAGGTTAGACCTATTTAGGCAAAGCTTAGCCCAACCCAGCCTAGCCTATTTCTATCCCTAACGGTACTGACATTGTATTGCAGAATAAGTAGCTATTGGTTAATTTTGATTTTCTAATAGGTGTCATATTCTTATTTATCGCTAAATTATCTTTATATGTGTGTAACCAAGTAAACCTTCTTTTCGAATTTTTCTGCACACGGAACAACACNTGACTCAGATTCAAAGTCAACAACCATATCTAACATCTAATGTAAACACAACAGAGTAGACTTTCTAGAGTATTTATCTGTTCAACATGAATAAGCTCTATGCATTTTTTGTAGGTTGTTCTGACATCACTAGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATTATTTCATATGGTTATTTTCTTGCCATATCTGTGATCTACATGTTGTGTTTTGTGATATTTGGCTCAGTCTTGGGACTAAAATTCTTCACGTTGAATGACTACAGCATCCAATTTGTGTTTTATTTCATCTATATAAACTTACAAATTTCACTGGCATTTCTGGTGGCTTCCTTTTTTTCAAATGTTAAGACTGCTACAGTAACTGCATATATAGGCGTCTTTGGAACCGGGCTATTAGCCGGCTTTCTTTTCCAATTTTTTGTTCAAGATACATCTTTTCCAAGAGGGTGGATCATTTGTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGGGTTATATGAGTTTTCACAATATTCCTTCTATGGGAGTACTTTGGGAACTGATGGTATGCGGTGGCAGGATCTAAGTGATAGCGCCAATGGCATGAAAGAGGTCTTAATTATCCTGTTTGCTGAGTGGATAGTAGTGCTTTTTGCTGCTTATTATATTGATCAAGTATTGTCATCCAGAAGCAGAAAAAGCCCTCTTTTCTTCTTGAAAGGCTATCAGAAAAAGCTTCTTTCATCATTCCAGAAGCCCAATATCCAAAGGCAGGGGTCAAAAGTTTTGGCTCAGATGGAGAAACCTGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGCTNCTACTTGAACCAACTATTAATCATGCAATTGTATGTGATAACCTAAAAAAAATCNATCCAGGGAGGGATGGAAATCCAGGGAAATTTGCAGTGAGAGGATTGTCCCTTGNTGTGCCTCGAGGGGAATGCTTTGGTATGCTTGGTCCCAATGGTGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACCTCTGGTACGGCATTTGTTCAAGGTCAGGACATAAGAACTCAAATGGATAGAATATATACTAGCATGGGAGTATGCCCACAGCATGATTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACTTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTCNGTCTTGACACAAGAGCAAATCTTTTTGGATGCAGCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06800	358	3733	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006800s00044206.1	PF00005.22	ABC_tran	268	344	4.10E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.028
SRR1783600	control	2.230
SRR1783602	moderate drought stress	2.377
SRR1811619	moderate drought stress	2.472

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.597
DRR006520	Root Summer glycyrrhizin high producing strain	6.308
DRR006521	Root Winter glycyrrhizin high producing strain	4.940
DRR006522	Root Winter glycyrrhizin high producing strain	4.445
DRR006523	Root Summer glycyrrhizin low producing strain	6.232
DRR006524	Root Summer glycyrrhizin low producing strain	6.692
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.806
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.474
SRR2868004	Drought Stress (root)	9.897
SRR2967015	Control (root)	10.939

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.041
SRR9715740	Leaf	6.041
SRR9715741	Leaf	4.328
SRR9715739	Root	4.998
SRR9715742	Root	8.224
SRR9715743	Root	7.682

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.089
SRR8749028	MeJA induced 9h	3.933
SRR8749029	MeJA induced 9h	1.884
SRR8749030	Uninduced	2.292
SRR8749031	Uninduced	3.260
SRR8749032	Uninduced	1.577

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.273
SRR8400027	Control - Root	13.587