Gene detail information of Glyur006796s00045738 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G18970.1 | 9.00E-66 | AWPM-19-like family protein |
| NR | XP_003528667.1 | 2.07E-100 | PREDICTED: uncharacterized protein LOC100779785 [Glycine max] |
| trEMBL | tr|K7L3U1|K7L3U1_SOYBN | 8.00E-101 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G38485.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06796 | 556 | 1550 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006796s00045738.1 | PF05512.6 | AWPM-19 | 16 | 155 | 1.50E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.420 |
| SRR1783600 | control | 3.521 |
| SRR1783602 | moderate drought stress | 2.213 |
| SRR1811619 | moderate drought stress | 2.061 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.505 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.202 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.198 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.228 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.410 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.466 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.111 |
| SRR2868004 | Drought Stress (root) | 8.565 |
| SRR2967015 | Control (root) | 7.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.774 |
| SRR9715740 | Leaf | 0.342 |
| SRR9715741 | Leaf | 0.977 |
| SRR9715739 | Root | 3.041 |
| SRR9715742 | Root | 6.658 |
| SRR9715743 | Root | 7.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.201 |
| SRR8400027 | Control - Root | 7.996 |