Gene detail

Gene detail information of Glyur006780s00046720

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15190.1	4.00E-12	chloroplast 30S ribosomal protein S20, putative
NR	XP_007133233.1	2.62E-36	hypothetical protein PHAVU_011G162800g [Phaseolus vulgaris]
Swissprot	tr\|Q9ASV6\|RR20_ARATH	2.00E-14	30S ribosomal protein S20, chloroplastic (Precursor)
trEMBL	tr\|V7AI00\|V7AI00_PHAVU	1.00E-36	Uncharacterized protein {ECO:0000313\|EMBL:ESW05227.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06780	4477	4995	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006780s00046720.1	PF01649.13	Ribosomal_S20p	71	104	1.20E-07

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	27.887
SRR1783600	control	24.878
SRR1783602	moderate drought stress	32.586
SRR1811619	moderate drought stress	35.400

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.753
DRR006520	Root Summer glycyrrhizin high producing strain	18.318
DRR006521	Root Winter glycyrrhizin high producing strain	24.440
DRR006522	Root Winter glycyrrhizin high producing strain	24.431
DRR006523	Root Summer glycyrrhizin low producing strain	24.847
DRR006524	Root Summer glycyrrhizin low producing strain	27.178
DRR006525	Leaf Summer glycyrrhizin high producing strain	251.763
DRR006526	Leaf Summer glycyrrhizin high producing strain	228.635

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.912
SRR2868004	Drought Stress (root)	11.701
SRR2967015	Control (root)	12.370

SRA Experiment	Description	TPM
SRR9715738	Leaf	112.542
SRR9715740	Leaf	152.404
SRR9715741	Leaf	92.106
SRR9715739	Root	18.886
SRR9715742	Root	13.555
SRR9715743	Root	16.298

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.503
SRR8749028	MeJA induced 9h	53.840
SRR8749029	MeJA induced 9h	40.981
SRR8749030	Uninduced	30.937
SRR8749031	Uninduced	14.643
SRR8749032	Uninduced	32.860

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.879
SRR8400027	Control - Root	35.344