Gene detail information of Glyur006777s00047426 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72430.1 | 3.00E-18 | SAUR-like auxin-responsive protein family |
| NR | AFK34109.1 | 5.08E-59 | unknown [Lotus japonicus] |
| trEMBL | tr|I3S1G7|I3S1G7_LOTJA | 2.00E-59 | Uncharacterized protein {ECO:0000313|EMBL:AFK34109.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06777 | 2752 | 3141 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006777s00047426.1 | PF02519.9 | Auxin_inducible | 12 | 106 | 3.70E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.135 |
| SRR1783600 | control | 13.841 |
| SRR1783602 | moderate drought stress | 125.172 |
| SRR1811619 | moderate drought stress | 121.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.208 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.392 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 216.751 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 210.623 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.627 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.563 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.634 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.745 |
| SRR2868004 | Drought Stress (root) | 4.208 |
| SRR2967015 | Control (root) | 7.525 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.064 |
| SRR9715740 | Leaf | 2.751 |
| SRR9715741 | Leaf | 1.644 |
| SRR9715739 | Root | 4.071 |
| SRR9715742 | Root | 6.038 |
| SRR9715743 | Root | 5.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.690 |
| SRR8749028 | MeJA induced 9h | 33.245 |
| SRR8749029 | MeJA induced 9h | 38.947 |
| SRR8749030 | Uninduced | 2.375 |
| SRR8749031 | Uninduced | 0.824 |
| SRR8749032 | Uninduced | 1.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.799 |
| SRR8400027 | Control - Root | 3.251 |