Gene detail

Gene detail information of Glyur006771s00045248

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G15780.1	1.00E-103	vesicle-associated membrane protein 724
NR	NP_001237046.1	1.39E-150	uncharacterized protein LOC100527252 [Glycine max]
Swissprot	tr\|O23429\|VA724_ARATH	6.00E-135	Vesicle-associated membrane protein 724
trEMBL	tr\|I1MGK7\|I1MGK7_SOYBN	1.00E-151	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G15760.1}

Sequence

Transcript Sequence

>Glyur006771s00045248.1
ATTAACAAATTTACTATGAAAAAGAAAAAGGGGAGATTATTTCTTTCTTCGTAACGAAGAAAAATGGAAAATACCAAAGTCTAACACGCTCTACAGTCTAGCTCGCTGCTGCTCGCCCTTCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTCTGAGTTACTTGTCGGAGACTGAGTTGCAGAGAGCAATGAGTCAGGAATCGTTCATCTATAGCTTCGTGGCTCGGGGGACGATGGTTTTAGCTGAGTACACCGAGTTCACCGGAAACTTCCCTGCGATTGCAGCTCAGTGTCTCCAGAAGCTTCCTTCCTCCAACAACAGGTTCACCTACAATTGTGACCACCACACCTTCAATTTCATTGTCGAAGATGGTTACGCTTACTGTGTTGTTGCCAAGGAATCTGTTAGCAAGCAGATCTCTATTGCATTCCTAGAACGTGCCAAAGCAGACTTCAAGAAAAGATATGGTGGTGGAAAAGCAGACACGGCTGTTGGCAAAAGTCTCAACAAGGAGTTTGGACCAGTTATGAAAGAGCACATGAAGTATATAATCGACCATGCTGAAGAGATTGAAAAGCTAATAAAAGTGAAAGCTCAAGTTTCAGAAGTTAAAAGTATTATGTTAGAGAACATTGACAAGGCTCTTGATAGAGGAGAAAATCTAACTATTCTTGCGGACAAGACGGAGACATTGCACTCACAGGCCCANGAGTTCAAAAAGAAAGGAACACAAGTCCGTCGGAAGATGTGGTATCAGAACATGAAAATTAAATTGACTGTTCTTGGAATTTTGTTGTTTTTGATCCTGGTTATCTGGCTTTCTGCNTGCCACGGATTCAAATGCAAAAACTAGCAAAGAATGAAAATTTACGGATAGTTATTCAAATGATGTTTAAAAAGCAATTTAGGGAGAATCTGCTTTGGGGGGGGGGTGTTTGGCAAAATGTTTCCTACCTTTTTTGTTGGTTAATGATATACGATATTCTTGGAAATTCTTCAAGAGAGGAAAAGGGAAGGGGGGAAGGGGTCTCTGTATCATGTGCTGGACTGTTTGTTCTTGTCAAACAATACAGTTGTGATTTGCTTCTCTTCTTCTGTATTTTTAAATATAGATAAAATGTTATTAACTTAGTCTCTCTTGTTTAAACAGTTGAGTTGATCTTGTTTTACTCCCCCAGAAAGCAGGATTTTCTTTTAAAGCATAGAAGGAAATTCTGCCAAATATGTAATATAGAGTATAGAGGAGTGATGAAGAGTAGCTAATGAAGTCAATATGTTGTTGATTTGTATTCCGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06771	859	3452	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0016192 vesicle-mediated transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006771s00045248.1	PF13774.1	Longin	31	111	3.00E-20
Glyur006771s00045248.1	PF00957.16	Synaptobrevin	129	215	7.20E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.101
SRR1783600	control	31.185
SRR1783602	moderate drought stress	25.924
SRR1811619	moderate drought stress	26.041

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.683
DRR006520	Root Summer glycyrrhizin high producing strain	30.235
DRR006521	Root Winter glycyrrhizin high producing strain	18.978
DRR006522	Root Winter glycyrrhizin high producing strain	18.544
DRR006523	Root Summer glycyrrhizin low producing strain	36.434
DRR006524	Root Summer glycyrrhizin low producing strain	36.535
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.022
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.860

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.724
SRR2868004	Drought Stress (root)	21.836
SRR2967015	Control (root)	23.861

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.214
SRR9715740	Leaf	13.906
SRR9715741	Leaf	11.778
SRR9715739	Root	5.446
SRR9715742	Root	14.667
SRR9715743	Root	15.904

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.540
SRR8749028	MeJA induced 9h	21.655
SRR8749029	MeJA induced 9h	21.190
SRR8749030	Uninduced	4.076
SRR8749031	Uninduced	0.762
SRR8749032	Uninduced	3.579

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.505
SRR8400027	Control - Root	37.709