Gene detail

Gene detail information of Glyur006755s00046237

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36010.2	2.00E-56	Pathogenesis-related thaumatin superfamily protein
NR	XP_004488803.1	2.28E-100	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1-like [Cicer arietinum]
Swissprot	tr\|Q9FSG7\|TP1A_MALDO	1.00E-66	Thaumatin-like protein 1a (Precursor)
trEMBL	tr\|A0A072V8H5\|A0A072V8H5_MEDTR	8.00E-98	Lectin kinase family protein {ECO:0000313\|EMBL:KEH38324.1}

Sequence

Transcript Sequence

>Glyur006755s00046237.1
ACTTAATTGAGCCATCAAGCGAGAAAGACATAAAATTAGAAACTCTAACGCGTAAATTAATTGAAGTTGTGTGATTCCAGAGAACAGAAGAAGAAAGATAGCTTCTTTTTTTTTCCCAAGCTCCACCTTCTTTTTATTCTCTTTATTTTTTCATTTTCATTTACACAATAACCTTTGTTCTCCTCAACCACTGTTCCACATGGTTCAGTTTCAACCAGCATCATCGTTTTCATTTTTGTTTTTGACACTCCATCTAGCACTAGCAGTATCAGGGGTCCATTCAGCAACATTCACTCTGGTTAACCAATGCAACTACACGGTGTGGCCAGCTTCACTTACTGATAAAAGCGGAGACGCAACCCTCTCACCGCCCACGGGCTTCGTTTTGAAACCGGGCGCGAACTCCACCGTCACGAGACCTGCCGGGTGGACCGGCCGATTCTGGGGCCGGACTCTCTGCACGACGGATTCCGCNACCGGAAACTTCTCCTGCGTCACCGGCGATTGCGGCACCGNGAAGTTGGCATGCGACGGCCGGGGAGGCAACCCGCCTGCCACGCTGACGGAATTCGCTTTGACCGGTGTCAACGGCCTCGACTACTATGACGTCAGCTTGGTAGACGGTTATAACGTCCCAATGGAGATAGTTCCACTTCCCGTGAATGGTTCTGGTTCAAGTAACTGTAACAGCACGGGTTGCCCTGCGGATCTGAACGCGGTGTGTCCAACGGAATTGAAGAAGGTCACGGAAAACGGAANGGTGGTGGCGTGCCAGGGGCCTTGTGCTGGAAATCGTTCAACCCTGCAGACTTGCGGGACGAGTGTGGATGCTCAGATATTCAAGAGGACTTGCCCTCAGGCCTACAGCTATGCCTACGACGACAACAACAAGACGTTTACATGTTCGGCGGCCACAAATTACCGCGTCATCTTTTGTCCTGCCTCCAATAACACCAGCTGCATGTACTCTTCCACAAGTGAAGCAGAATTGTTTGCTTGTCACCAACAATTTGCAATAGAAGTCAAAAGAAATATCCAAGATATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06755	1079	5227	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006755s00046237.1	PF00314.12	Thaumatin	35	247	7.00E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.218
SRR1783600	control	0.192
SRR1783602	moderate drought stress	0.209
SRR1811619	moderate drought stress	0.219

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.261
DRR006520	Root Summer glycyrrhizin high producing strain	0.312
DRR006521	Root Winter glycyrrhizin high producing strain	0.159
DRR006522	Root Winter glycyrrhizin high producing strain	0.103
DRR006523	Root Summer glycyrrhizin low producing strain	0.234
DRR006524	Root Summer glycyrrhizin low producing strain	0.316
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.828
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.932

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.429
SRR2868004	Drought Stress (root)	0.917
SRR2967015	Control (root)	0.397

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.045
SRR9715740	Leaf	1.472
SRR9715741	Leaf	3.771
SRR9715739	Root	1.017
SRR9715742	Root	1.671
SRR9715743	Root	1.407

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.650
SRR8749028	MeJA induced 9h	1.788
SRR8749029	MeJA induced 9h	0.567
SRR8749030	Uninduced	3.319
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	1.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.027
SRR8400027	Control - Root	1.082