Gene detail

Gene detail information of Glyur006753s00039504

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G16060.1	ATP binding microtubule motor family protein
NR	XP_006583376.1	PREDICTED: kinesin-like protein KIF2C-like [Glycine max]
Swissprot	tr\|Q940B8\|KIN13_ARATH	Kinesin-13A
trEMBL	tr\|I1KIR3\|I1KIR3_SOYBN	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur006753s00039504.1
AGAAAGTGAAGGACCATAAGCGTTCACCTCCGTTATAGATTCCTCTATCTCCGTCTCTGTTTCTATTTCTCGNCTCGTACGCGTGCGTGCATACTCGTGCTGCAACTAGAAAATCCATTGCGAATTTCGCTGTAGATGAGTGTGGNTGGGAGATCGATGATGCCGCGATCAAGTTCTGCCGTTCACCACCAGCGACAGAGCTCCGATAACTTCATCCTCGACGCGAGTTATCACGGAAGATGGTTTCATCCTTCCGCTTTCGCGCAGGAGTTTGGGACTCGATCTTCGAGCTTGAGGAAAACCGACGATGATCGTGTGCTGACCAGTGGCTTGCTTGACCTACATTCCTTNGATACTGAGCTTATACCTGAGANTTCTGATGTTCGGGGACAAAATTTTGATGACTCTGAGCTTATTTTCTCCGGTAACAAACTTGCNCCGAGGTCTCGGGGCTTGCCTGAGAGCCATGTCCTTAGAAGCTTGTCATCGGATAAAGAGAAAGCAAACAATGTTGCTAAGATCAAAGTTGTGGTATGCTTCTTTCCGTGTGTTTCCTTTTCANGCCTTTCATCTTTTTCTTTTATTGGTAAACTAGGGCCTTTAGTACCTGTGACAATTGCATTTTTTTTTGGCTGAGACTGAGAGTGCTGCTTATGCTGCAGGTTCGGAAGAGACCACTAAATAAGAAGGAAATANCAAAGAAAGAGGAAGATATTATTACCATAGATTCAAATTCTCTAACAGTTCATGAAAGAAAACTCAAGGTTGACTTAACAGAATATGTTGAGAAACATGAGTTTTTCTTTGATGCTGTGCTGAATGAAGATGTTTCAAATGATGAAGTGTATGCTGAGACTGTGGAGCCCGTAGTTCCATTGATATTCCAACGAACAAAAGCAACTTGCTTTGCATATGGCCAAACTGGTAGTGGGAAGACGTATACTATGCAACCATTGCCTCTCAAAGCCTCCCAAGATATTTTAAGATTAATGCACCACACATACTGGAACCAAGGTTTCCAATTGTATGTTAGTTTCTTCGAAATATATGGGGGAAAACTATTTGATCTCCTCAATGATCGAAAAAAACTTTGCATGAGGGAGGATGGGAAGCAACAGGTTTGTATTGTTGGCTTGCAAGAATACAAAGTATCTAAAGTTGAAACAATCAAGGAATTTATTGAGAAAGGAAATGCTACAAGAAGTACTGGCACAACTGGTGCAAATGAGGAATCCTCTCGGTCACACGCTATACTTCAGCTTTGTATCAAGAGATCAGCTGATGGGACTGAATCAAAGCCTGCTCGAATTATAGGCAAACTATCTTTTATAGATCTGGCTGGAAGTGAACGTGGTGCAGATACTACAGATAATGATAAGCAGACTAGGATTGAAGGTGCTGAAATTAATAAAAGCTTACTTGCACTGAAAGAATGCATTAGAGCGCTAGACAATGACCAAGGGCATATCCCTTTTAGAGGAAGTAAATTAACTGAAGTTCTGCGAGACTCTTTTGTTGGTGATTCACGGACTGTAATGATATCATGCATTTCGCCAAGCTCAGGGTCATGTGAGCATACTCTCAACACATTAAGATATGCTGACAGAGTGAAGAGCCTGTCAAAAGGAAACAGCTCCAGAAGGGATCCCCCTTCTTCCTCAAACCTTAGAGACTCAACTGTATTGCCAGTTCATGATGATACCTTTGAGGATGAAATAACATATGTTTCCAGTGAGAGGAATCAATTCGGATGGTCCAAACAGCCTGAAAGAGAACCGTCTCCTCCAAATAATTTGGATCGTATTCCAAGTGGTAGGATGGGGGGAAATTTGGCACCACCTTTTTATCTTGACCAACAAAAGGGTCAAAGAGGTTTTCAAAATGATAGAATTGTAAATGAAAATGATTACCTAGGACCAACATATGGACAAGTCAGAACAAGAAAAACAGGCAAGAGGGTGGATAACATCCAGTTATCTGCTGTGGAGGACAAAAGGAAGATAGAATCCCGTGTTAAACATGTAGATTTATCACATGTTGTGAGCAAACATTCTGATCCTGATGATGATTTAAATGCCCTGCTGAAGGAAGAGGAAGATCTTGTAACTGCTCACAGGAGACAAGTGGAGGAAACAATAGACATTGTTAGGGTGGAGATGAATTTACTCGTTGAAGCTGACCAACCGGGAAATCAACTGGATGATTATATTTCCAAATTGAATACCATTTTGTCACAAAAAGCTGCAGGAATCTTTCAATTGCAGACGCAGTTGGCTCAGTTTCAGAGACGCCTAAACGAGTATAATGTTTTCGTATCTTCTGGTAACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06753	453	5241	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006753s00039504.1	PF00225.18	Kinesin	5	321	5.80E-94
Glyur006753s00039504.2	PF00225.18	Kinesin	99	415	8.70E-94

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.575
SRR1783600	control	5.516
SRR1783602	moderate drought stress	5.415
SRR1811619	moderate drought stress	5.430

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.296
DRR006520	Root Summer glycyrrhizin high producing strain	8.133
DRR006521	Root Winter glycyrrhizin high producing strain	4.022
DRR006522	Root Winter glycyrrhizin high producing strain	4.151
DRR006523	Root Summer glycyrrhizin low producing strain	5.764
DRR006524	Root Summer glycyrrhizin low producing strain	5.743
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.826
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.781

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.864
SRR2868004	Drought Stress (root)	9.963
SRR2967015	Control (root)	10.124

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.848
SRR9715740	Leaf	1.566
SRR9715741	Leaf	2.024
SRR9715739	Root	0.356
SRR9715742	Root	3.470
SRR9715743	Root	4.037

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.634
SRR8749028	MeJA induced 9h	6.040
SRR8749029	MeJA induced 9h	2.545
SRR8749030	Uninduced	1.662
SRR8749031	Uninduced	2.474
SRR8749032	Uninduced	2.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.156
SRR8400027	Control - Root	9.647