Gene detail information of Glyur006747s00046110 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G28720.1 | 6.00E-43 | Histone superfamily protein |
| NR | NP_001265978.1 | 4.63E-85 | uncharacterized protein LOC101502541 [Cicer arietinum] |
| Swissprot | tr|Q9ZUS0|H2B4_ARATH | 3.00E-71 | Histone H2B.4 |
| trEMBL | tr|Q9M3H6|Q9M3H6_CICAR | 2.00E-85 | Histone H2B {ECO:0000256|RuleBase:RU000451} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06747 | 1165 | 2938 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006747s00046110.1 | PF00125.19 | Histone | 48 | 115 | 4.60E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 50.107 |
| SRR1783600 | control | 53.885 |
| SRR1783602 | moderate drought stress | 39.805 |
| SRR1811619 | moderate drought stress | 42.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 165.605 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 168.998 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 108.204 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 112.537 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 150.522 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 152.602 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 71.381 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 75.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 559.643 |
| SRR2868004 | Drought Stress (root) | 446.617 |
| SRR2967015 | Control (root) | 423.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 430.492 |
| SRR9715740 | Leaf | 386.119 |
| SRR9715741 | Leaf | 372.661 |
| SRR9715739 | Root | 182.553 |
| SRR9715742 | Root | 208.140 |
| SRR9715743 | Root | 193.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 329.598 |
| SRR8749028 | MeJA induced 9h | 243.229 |
| SRR8749029 | MeJA induced 9h | 362.728 |
| SRR8749030 | Uninduced | 133.005 |
| SRR8749031 | Uninduced | 222.306 |
| SRR8749032 | Uninduced | 222.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 432.221 |
| SRR8400027 | Control - Root | 396.488 |