Gene detail

Gene detail information of Glyur006703s00045321.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66920.2	3.00E-102	Protein kinase superfamily protein
NR	AES59881.2	0	receptor-like kinase [Medicago truncatula]
COG	YP_001958461.1	1.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q3ECH2\|Y1670_ARATH	9.00E-105	Probable receptor-like protein kinase At1g67000 (Precursor)
trEMBL	tr\|G7I961\|G7I961_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES59881.2}

Sequence

Transcript Sequence

>Glyur006703s00045321.1
TTGCGCAACATAATGGTAAAAATGTTATCTTCCATTGGATTGTTGTTGTTCATGGTTTGCCTTAATACTGGGCAGCATGCGGTTGTGACAGGCACAGTTAATAATTGTCCAGATTTTTCATGCGGAAATCAGGTAATCCGGTTCCCTTTCCGGACCAAAGGCCGCCATCCACCACCATGCGGCTTTCCCGGTTTTGATTTATCTTGTTCCTCAAGTAATGAGACTCTGATTGAACTCCCTGAATCAGTGAAGCTCACTGTCAAATATATTGACTACACACAACAAACTATTGAGCTGTCTGATCCATATGGTTGCCTTTACAGACAACTCCACAACCTCACTCTATCGGCCTCTCATTTCCAGTTCAAGCCCAAGCCCGACTATCAATTTGGTGCCTATCAATTGTTCAATTGTTCACGGATGATTAGAGATTTGTCGTTGGACTCCCTTTTGGTTCCGTGCCTATCCACCTCAAGCTCTCAAGTATACGCCATTCCGTCTAGTGGATCCATCGCATACCTGCCCCTCTCGTTTTGCACCAAAATGTTTAATGTTTCATTCAACAACCCATTTGATTTTCTTCCTGACGACAACTTTCTTCGTTTGACATGGTCTGATCCAAAGTGTAATCATTGCGAATCTAAGGGAAACAGATGTGGGTGGAACTGGAAGAATAACACTGCTAACAAGGAAATATATTGTTTCCCCAAAACCCCCAAAGGTTCATCAACTGCTCTAGTGACCACCACAGGGTCAATCCTAGGATCGCTGTTTTTTATCTTGTTGACTGGTGCAGTCTACCACATCTATGACTCTTACATGCTGGAGAAGGAAAAGCAAGCAATTATAGAAAAATTTCTACAAGACTATAGGGCTCTTAAGCCCACCAGATACTCTTATGCGGAAATCAAGAGAATCACCAACAATTTTGAGGACAAGTTGGGACAAGGAGCCTATGGAACTGTGTACAAAGGAAACATTTCAAAGGAATTTACAGTTGCAGTGAAGATCCTGAATGTTTCCCAAGGAAATGGGGAAAACTTCATCAATGAAGTTGGTACAATGGGTAGAATCCACCATATTAACATCGTTCGCTTGGTCGGTTTCTGCGCCGATGGCTTTATAAGAGCTCTTGTTTACGAGTTCTTGCCAAATGGATCACTGCAGAAGTTCATAAATTCACCAGACAACAGGCAAAACTTCCTGGGTTGGAAAAGGCTGCACGAAATTGCTTTAGGAATAGCTAAAGGGATTGAGTACCTCCATCAGGGTTGTGATCAGCGCATTCTCCATTTTGATATCAAACCACAAAATGTGTTGCTAGATCATAACTTTGCTCCAAAAATATGTGACTTTGGTCTAGCAAAGTTGTGTTCAAGGGATCAGAGCATAGTGTCAATGACCACAGCTAGAGGAACTTTGGGCTACATTGCTCCCGAAGTTTTCTCAAGGAACTTTGGAAACGTGTCTTACAAATCAGATGTTTATAGTTATGGAATGATGTTGCTTGAAACAATAGGAGGGAGGAAGATCACAGAGGACTTAGGGGAAAACACTGGCCATGTTTACTACCCGGAATGGATTTATAATCTCTTGGAAGAACATGAGGAAATGAGAATTCATGTTGATGATGAAGGGGATGCAAAGATTGCAAGGAAACTGGCCATTGTGGGACTTTGGTGCATTCAGTGGCATGCTATGGATCGACCATCAATGCAAATGGTGGTTCAAATGTTAGAGGGAGACGTGGACAGAACCCCAATACCTCCTAATCCTCTTGCTTCTGGTTCTGGAGGACCAAGGAGAAAGAGGGAAAGTGCAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06703	1	3340	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006703s00045321.1	PF13947.1	GUB_WAK_bind	34	103	5.00E-07
Glyur006703s00045321.1	PF00069.20	Pkinase	311	576	3.60E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.168
SRR1783600	control	0.075
SRR1783602	moderate drought stress	0.062
SRR1811619	moderate drought stress	0.060

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.029
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.020
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.968
DRR006524	Root Summer glycyrrhizin low producing strain	2.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	57.262
DRR006526	Leaf Summer glycyrrhizin high producing strain	55.988

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.853
SRR2868004	Drought Stress (root)	8.657
SRR2967015	Control (root)	3.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.182
SRR9715740	Leaf	8.822
SRR9715741	Leaf	22.623
SRR9715739	Root	0.000
SRR9715742	Root	0.581
SRR9715743	Root	0.866

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.605
SRR8749028	MeJA induced 9h	6.053
SRR8749029	MeJA induced 9h	1.230
SRR8749030	Uninduced	0.545
SRR8749031	Uninduced	0.163
SRR8749032	Uninduced	0.240

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.309
SRR8400027	Control - Root	0.462