Gene detail

Gene detail information of Glyur006680s00046439

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38250.1	4.00E-45	Homeodomain-like superfamily protein
NR	XP_007140273.1	9.22E-123	hypothetical protein PHAVU_008G098300g [Phaseolus vulgaris]
Swissprot	tr\|Q9SDW0\|TGT3A_ARATH	2.00E-75	Trihelix transcription factor GT-3a
trEMBL	tr\|V7B301\|V7B301_PHAVU	3.00E-123	Uncharacterized protein {ECO:0000313\|EMBL:ESW12267.1}

Sequence

Transcript Sequence

>Glyur006680s00046439.1
TGCTTATTTAATTTCTTTAATGAAATATAGTAACCTTTTAATTTGTCTTTGACACCTAAGCAAAAGAAAATCAATCTCTTTCTCTGTTTATATTTTTTTCTCTCTTGTATGATACGCGATTCACACCTGCTGTTCACACCGCACCCCCCACCTACATATATATATTCTCCCTTTCTTTTTCTCTCTCATCTTTTCCCTCTCTCTCTCCATCTCCTCCATAGCCAAAAACACCCCAACTTTTTCCCTATATCATTCAGAGCCTCTAATCTTCTCCTCTTTCAGGACTTTGCAAGATTATACATACATATATATATAAACTGGATCACTAGGGAATAATATCTCACTTTTTTGCTTTGGTTTTCTTTTTCAATTTTAATGGAGGGTCATCATCATCATCATCTCCATCAACAACAACAACATCATCTAATTCAACAACAACAACAAAGGCAACATCATCATCAACAACATAACATGATGGGTATTACTAGTAGTACTAGTAGTGTTAACGCTGTGGTGGATGCTGCAGTGGTGGATAGGTTCCCTCAATGGAGTATTCAAGAGACAAAGGAGTTCCTCATGATTCGTGCTGAGCTGGATCAGACTTTTATGGAGACAAAGAGGAACAAGCAGCTCTGGGAAGTCATCTCCAACAGGATGAAGGAAAAGGGTTACCATAGAAGTGCTGAGCAGTGCAAGTGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGATGTGAAACGATGGAGGCAGAAGCCATGAGGCAGCAATTCCCATTTTACAATGAGCTCCAAGCGATTTTCACTTCAAGGATGCAGAGAATGCTGTGGGCAGAAGCAGAAGGAGGAGGGTCAAAGAAGAAAGGGGTGCAACACCTTTCTTCTGAGGATGAGGAAGAAGGGAATGAAGAGAGNGAGGGAGATCATCAAAAGGGTAGTAGCAGCACCACAAGGAGGAATAAGAAGAAAAAGGGTAATAAGGTGGTTGGTGGTGGAGGAAGTGGTGATAACAGTTTGAAGGAGATATTGGAGGAGTTTTTGAGGCAACAAATGCAAATGGAGGCACAATGGATGGAGGCATATGAGGCAAGGGAGAGTGAGAGGAGATTGAAGGAGATGGAGTGGAGGCAAGCAATGGAGGCAATGGAGAATGAGAGGATAATGATGGAGCAGAGGTGGAGGGAAAGGGAAGAGCAGAGAAGGATGAGGGAAGAAGCTAGGGCTGATAAGAGAGATGCACTCATTACTGCTCTTCTCAACAAGCTCACAAGGGAACAACAACAACAACACATGTAGTAGTTTTGCTTCCTCTTTGGCTATAGCTGCTCTAGCTAGCTAACTTTTTTAATTGTTTCTTCTTCTGATGATCAAGCAAGGCTTAATGTTAGAGGTTTGTTTCTGTGAACTTACTCAAATTATCTTTTGGAAGCTTTATGAAATTAATCTAGTGGCTATAGTTTACCATATTATTGTTATGATATATATACCTTTCTTTAATAGGCCAACGGGATTAGTGAGTTAGTTGTTTGAAATGAAAGGAAAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06680	2763	4806	-

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006680s00046439.1	PF13837.1	Myb_DNA-bind_4	57	141	3.10E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.518
SRR1783600	control	2.450
SRR1783602	moderate drought stress	1.969
SRR1811619	moderate drought stress	1.985

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.083
DRR006520	Root Summer glycyrrhizin high producing strain	9.154
DRR006521	Root Winter glycyrrhizin high producing strain	5.339
DRR006522	Root Winter glycyrrhizin high producing strain	5.220
DRR006523	Root Summer glycyrrhizin low producing strain	52.563
DRR006524	Root Summer glycyrrhizin low producing strain	52.892
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.567
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.549

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.732
SRR2868004	Drought Stress (root)	10.826
SRR2967015	Control (root)	6.936

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.226
SRR9715740	Leaf	8.474
SRR9715741	Leaf	23.448
SRR9715739	Root	2.363
SRR9715742	Root	6.314
SRR9715743	Root	5.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.405
SRR8749028	MeJA induced 9h	54.906
SRR8749029	MeJA induced 9h	95.011
SRR8749030	Uninduced	88.010
SRR8749031	Uninduced	123.843
SRR8749032	Uninduced	40.315

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.499
SRR8400027	Control - Root	4.630