Gene detail information of Glyur006668s00043213 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38840.1 | 5.00E-06 | SAUR-like auxin-responsive protein family |
| NR | XP_003601677.1 | 7.20E-32 | Auxin-induced protein 6B [Medicago truncatula] |
| Swissprot | tr|P33083|AX6B_SOYBN | 4.00E-32 | Auxin-induced protein 6B |
| trEMBL | tr|G7JAR1|G7JAR1_MEDTR | 3.00E-32 | SAUR-like auxin-responsive family protein {ECO:0000313|EMBL:AES71928.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06668 | 5182 | 5373 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006668s00043213.1 | PF02519.9 | Auxin_inducible | 13 | 64 | 8.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.905 |
| SRR1783600 | control | 0.997 |
| SRR1783602 | moderate drought stress | 2.175 |
| SRR1811619 | moderate drought stress | 1.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.283 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.495 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.291 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.797 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.287 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.280 |
| SRR2868004 | Drought Stress (root) | 0.760 |
| SRR2967015 | Control (root) | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.271 |
| SRR9715740 | Leaf | 2.138 |
| SRR9715741 | Leaf | 3.897 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.139 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.211 |
| SRR8749029 | MeJA induced 9h | 0.594 |
| SRR8749030 | Uninduced | 0.332 |
| SRR8749031 | Uninduced | 1.705 |
| SRR8749032 | Uninduced | 0.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.898 |
| SRR8400027 | Control - Root | 0.817 |