Gene detail information of Glyur006668s00043212 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38840.1 | 1.00E-24 | SAUR-like auxin-responsive protein family |
| NR | XP_004506991.1 | 1.43E-81 | PREDICTED: auxin-induced protein X10A-like [Cicer arietinum] |
| Swissprot | tr|P33083|AX6B_SOYBN | 2.00E-45 | Auxin-induced protein 6B |
| trEMBL | tr|A0A061DYH2|A0A061DYH2_THECC | 1.00E-62 | SAUR-like auxin-responsive protein family {ECO:0000313|EMBL:EOX97814.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06668 | 1167 | 4548 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006668s00043212.1 | PF02519.9 | Auxin_inducible | 17 | 89 | 1.30E-28 |
| Glyur006668s00043212.1 | PF02519.9 | Auxin_inducible | 115 | 183 | 1.70E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.629 |
| SRR1783600 | control | 2.827 |
| SRR1783602 | moderate drought stress | 5.160 |
| SRR1811619 | moderate drought stress | 4.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.911 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.897 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.852 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.688 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.292 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.227 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.904 |
| SRR2868004 | Drought Stress (root) | 0.910 |
| SRR2967015 | Control (root) | 0.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.455 |
| SRR9715740 | Leaf | 13.669 |
| SRR9715741 | Leaf | 11.590 |
| SRR9715739 | Root | 0.190 |
| SRR9715742 | Root | 0.607 |
| SRR9715743 | Root | 0.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.075 |
| SRR8749028 | MeJA induced 9h | 4.733 |
| SRR8749029 | MeJA induced 9h | 3.291 |
| SRR8749030 | Uninduced | 9.479 |
| SRR8749031 | Uninduced | 8.852 |
| SRR8749032 | Uninduced | 7.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.087 |
| SRR8400027 | Control - Root | 2.543 |