Gene detail information of Glyur006653s00046288 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09220.1 | 7.00E-102 | laccase 7 |
| NR | KEH28951.1 | 0 | laccase/diphenol oxidase family protein [Medicago truncatula] |
| COG | YP_006420780.1 | 6.00E-08 | putative multicopper oxidase [Terriglobus roseus DSM 18391] |
| Swissprot | tr|Q9LFD2|LAC8_ARATH | 2.00E-140 | Laccase-8 (Precursor) |
| trEMBL | tr|A0A072UHQ4|A0A072UHQ4_MEDTR | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06653 | 2804 | 4950 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006653s00046288.1 | PF00394.17 | Cu-oxidase | 2 | 102 | 4.90E-29 |
| Glyur006653s00046288.1 | PF07731.9 | Cu-oxidase_2 | 232 | 346 | 4.90E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.290 |
| SRR1783600 | control | 3.954 |
| SRR1783602 | moderate drought stress | 6.511 |
| SRR1811619 | moderate drought stress | 6.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 29.699 |
| SRR2868004 | Drought Stress (root) | 114.078 |
| SRR2967015 | Control (root) | 58.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.902 |
| SRR9715740 | Leaf | 0.656 |
| SRR9715741 | Leaf | 7.588 |
| SRR9715739 | Root | 1.416 |
| SRR9715742 | Root | 6.253 |
| SRR9715743 | Root | 6.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.934 |
| SRR8749028 | MeJA induced 9h | 65.873 |
| SRR8749029 | MeJA induced 9h | 23.637 |
| SRR8749030 | Uninduced | 1108.997 |
| SRR8749031 | Uninduced | 2888.919 |
| SRR8749032 | Uninduced | 457.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.272 |
| SRR8400027 | Control - Root | 35.613 |