Gene detail information of Glyur006614s00044110 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | ATCG00350.1 | 4.00E-23 | Photosystem I, PsaA/PsaB protein |
| NR | XP_004491447.1 | 4.16E-47 | PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like isoform X1 [Cicer arietinum] |
| COG | YP_007142336.1 | 1.00E-15 | ATP synthase F1 subcomplex subunit alpha [Crinalium epipsammum PCC 9333] |
| Swissprot | tr|Q06FW5|PSAA_PELHO | 3.00E-25 | Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000255|HAMAP-Rule:MF_00458} |
| trEMBL | tr|G7K4B8|G7K4B8_MEDTR | 5.00E-45 | PPR containing plant-like protein {ECO:0000313|EMBL:AET00634.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06614 | 1594 | 4014 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006614s00044110.1 | PF00223.14 | PsaA_PsaB | 204 | 253 | 8.80E-21 |
| Glyur006614s00044110.1 | PF00006.20 | ATP-synt_ab | 247 | 296 | 4.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.668 |
| SRR1783600 | control | 1.708 |
| SRR1783602 | moderate drought stress | 2.317 |
| SRR1811619 | moderate drought stress | 2.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.524 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.134 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.429 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.412 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.037 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.377 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.508 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.100 |
| SRR2868004 | Drought Stress (root) | 0.005 |
| SRR2967015 | Control (root) | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.985 |
| SRR9715740 | Leaf | 1.871 |
| SRR9715741 | Leaf | 1.443 |
| SRR9715739 | Root | 0.410 |
| SRR9715742 | Root | 0.217 |
| SRR9715743 | Root | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.393 |
| SRR8749028 | MeJA induced 9h | 0.173 |
| SRR8749029 | MeJA induced 9h | 0.284 |
| SRR8749030 | Uninduced | 0.113 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |