Gene detail information of Glyur006603s00046049 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40670.1 | 1.00E-29 | PQ-loop repeat family protein / transmembrane family protein |
| NR | XP_004488939.1 | 4.12E-49 | PREDICTED: cystinosin homolog [Cicer arietinum] |
| Swissprot | tr|P57758|CTNS_ARATH | 2.00E-35 | Cystinosin homolog |
| trEMBL | tr|A0A072TV48|A0A072TV48_MEDTR | 7.00E-48 | Lysosomal cystine transporter family protein {ECO:0000313|EMBL:KEH17405.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06603 | 6 | 1089 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006603s00046049.1 | PF04193.9 | PQ-loop | 1 | 35 | 2.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.899 |
| SRR1783600 | control | 15.414 |
| SRR1783602 | moderate drought stress | 19.088 |
| SRR1811619 | moderate drought stress | 19.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.530 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.970 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.456 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.271 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.544 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.229 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.226 |
| SRR2868004 | Drought Stress (root) | 9.719 |
| SRR2967015 | Control (root) | 6.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.578 |
| SRR9715740 | Leaf | 10.107 |
| SRR9715741 | Leaf | 11.766 |
| SRR9715739 | Root | 4.223 |
| SRR9715742 | Root | 7.581 |
| SRR9715743 | Root | 7.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.123 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.211 |
| SRR8749030 | Uninduced | 0.167 |
| SRR8749031 | Uninduced | 0.801 |
| SRR8749032 | Uninduced | 0.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.534 |
| SRR8400027 | Control - Root | 13.327 |