Gene detail

Gene detail information of Glyur006585s00045185.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26340.1	1.00E-34	F-box/RNI-like/FBD-like domains-containing protein
NR	XP_006602503.1	9.71E-127	PREDICTED: F-box/FBD/LRR-repeat protein At5g56420-like [Glycine max]
Swissprot	tr\|Q8H1R7\|FDL27_ARATH	1.00E-40	F-box/FBD/LRR-repeat protein At4g26340
trEMBL	tr\|K7LAQ1\|K7LAQ1_SOYBN	1.00E-132	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G46581.1}

Sequence

Transcript Sequence

>Glyur006585s00045185.1
ATGGCCGATAGGATAAGCACTTTACCAGATTCAATTCTGTGTCACATTCTCTCTTATTTGCCAACCAAACTAGCTGTTGCCACAAGCATCCTCTCAAGGAGGTGGAGGCCTCTATGGCTCTCAGTTTCCACCCTTGACTTCAACGACAGAGACTATTTGCAAAACAGAGAGACCTATTCTCGTTTTATTCACTTGGTGTACACTGCTATGCTCTTGCGTGATGGGTCACGACCCATTAAACGGTTCTCCCTCGAGTGTGCCTCTGTATTTTGTGACGCTTCTATGGTCAATACACTAGTTACTGCCGCAACAAATCGCAAAGTTGAGAATCTCTGTCTTCTGCTGTCTTCGACCATGAGGTTGCCGTCTAGTGTTCTCACAAGCAGAACGCTTGTCGTTTTGAACTTGAAAAAGTTAAATGTGTACCACACTCTTTCTTCTGTCGATTTGCCTTCGCTCAAAACACTGCACTTGAGAAAGGTTCAATTCCAAGAGGAGCGATATCTTTTTGAGATTCTCTCTGCATGTCCAGTTCTTGAGGTTTTGCGGATGAAACGTTTAAAGGTCGTCAACCACAACGTTACCGATGGAAAGTTGATACACTTACCGAAATTGGTGAATGCAGATATTTCCGAGTCTAAAGTTTATTTCCCGTTAAAAGCATTTTATAATGTGGAGTTTCTAAGTGCAGATGTGACCTCTGCGGCTCAATATTCTTCTTTTCTCAATTTAACCTACGTGGAGCTTATCTTCAAACACTATTGCTGGGATTGGTTAATTGATTTGCTGAATGGTTGCCCCAGTCTTCGAAATCTTGTAATTGATAAGAATGAACACAGGAAAGCAAATAATGATTGGTTGCAACCGCACTCTGTCCCCCAATGCCTTAACACACAACTTAAAACATTGTGCGTTAGAAAATATGGAGGCAAGGACAGTGAGCTTCAATTTACAAGTTATATTATGCAAAATGCAAGGGTTCTACGCAGCGTGACAATTTGCAGTACTAGATCCTCAAATCTTCAGGAAAAGTATGAAATGGTTAAGAAATTATCCTTGTGTCCAAGGAGCTCAGCAACATGTCAACTTTACTTTGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06585	3801	5111	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006585s00045185.1	PF00646.28	F-box	4	39	2.10E-05
Glyur006585s00045185.1	PF08387.5	FBD	286	335	5.90E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.183
SRR1783600	control	0.247
SRR1783602	moderate drought stress	0.305
SRR1811619	moderate drought stress	0.320

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.924
DRR006520	Root Summer glycyrrhizin high producing strain	2.029
DRR006521	Root Winter glycyrrhizin high producing strain	1.112
DRR006522	Root Winter glycyrrhizin high producing strain	0.976
DRR006523	Root Summer glycyrrhizin low producing strain	2.901
DRR006524	Root Summer glycyrrhizin low producing strain	2.744
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.253
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.333

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.241
SRR2868004	Drought Stress (root)	1.013
SRR2967015	Control (root)	1.325

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.443
SRR9715740	Leaf	0.694
SRR9715741	Leaf	0.803
SRR9715739	Root	0.964
SRR9715742	Root	1.821
SRR9715743	Root	1.863

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.045
SRR8749028	MeJA induced 9h	0.021
SRR8749029	MeJA induced 9h	0.006
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.309
SRR8400027	Control - Root	0.346