Gene detail information of Glyur006554s00043763 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12450.1 | 6.00E-80 | SNARE associated Golgi protein family |
| NR | XP_003525557.1 | 3.04E-163 | PREDICTED: uncharacterized protein LOC100808455 [Glycine max] |
| trEMBL | tr|K7KN09|K7KN09_SOYBN | 1.00E-163 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G04113.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06554 | 763 | 4635 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006554s00043763.1 | PF09335.6 | SNARE_assoc | 126 | 232 | 3.30E-11 |
| Glyur006554s00043763.2 | PF09335.6 | SNARE_assoc | 126 | 246 | 2.40E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.330 |
| SRR1783600 | control | 8.415 |
| SRR1783602 | moderate drought stress | 7.816 |
| SRR1811619 | moderate drought stress | 7.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.742 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.114 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.104 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.732 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 57.190 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.978 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.360 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.838 |
| SRR2868004 | Drought Stress (root) | 18.268 |
| SRR2967015 | Control (root) | 20.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.282 |
| SRR9715740 | Leaf | 8.924 |
| SRR9715741 | Leaf | 10.904 |
| SRR9715739 | Root | 10.833 |
| SRR9715742 | Root | 20.870 |
| SRR9715743 | Root | 17.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.247 |
| SRR8749028 | MeJA induced 9h | 15.673 |
| SRR8749029 | MeJA induced 9h | 14.855 |
| SRR8749030 | Uninduced | 9.452 |
| SRR8749031 | Uninduced | 3.984 |
| SRR8749032 | Uninduced | 3.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.986 |
| SRR8400027 | Control - Root | 21.251 |