Gene detail

Gene detail information of Glyur006542s00044996

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	6.00E-117	disease resistance protein (TIR-NBS-LRR class), putative
NR	KEH17377.1	0	functional resistance protein KR1, putative [Medicago truncatula]
COG	YP_001520699.1	3.00E-07	TPR domain-containing protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q40392\|TMVRN_NICGU	3.00E-150	TMV resistance protein N
trEMBL	tr\|A0A072TIY8\|A0A072TIY8_MEDTR	0	Functional resistance protein KR1, putative {ECO:0000313\|EMBL:KEH17377.1}

Sequence

Transcript Sequence

>Glyur006542s00044996.1
CGTAGATTCACCTATGATGTGTTCATCAGTTTTAGAGGCTCCGACACTCGCTATGGTTTTACTGGCAATCTCTACAAAGCTCTCTCTGATAGGGGAATCCACACCTTCTTTGATGATAGGGAGCTTCATGGAGGGGAAGAAATCACAACGTCACTCTTCAAGGCCATTGAAGAGTCATGGGTTTCCATTCCCGTGTTCTCTAGCAACTATGCTTCCTCTTCATTTTGCTTGGACGAACTTGTCCATATCATGGAGTGCTTTAAGGCAGAGGAACGCCTGGTGTTGCCGGTTTTCTATGACTTGGATCCTTCTCACGTGCGGCATCAGACTGGTAGTTTTGGTGAAGCAATGGATAAGCATGTAGCCAGGTTCCAAAATAACACTGACGACATGGAGAGATTGCGCAAATGGAAGATGGCTCTTACCCAAGCGGCTAACTTGTCCGGTCACCATTTCAAACATGGGAATGAATATGAACATGACTTTATTGGAAAGATAGTTGAAGTGGTCTTCGATAGGACCAATCATGCTCCTTTACATGTTGCAAATCACCCCGTTGGACTGGGGTCGCGAGTGCAACAAGTGAGGTTGCTTCTGGATGTTGGATCTGATGATAGAGTCCTTATGGTAGGGATCCATGGAATTGGTGGAGTGGGTAAAACAACACTCACACGAGCAATTTATAATTCAATGATTGGTCAATTTGAAGGTTTGTGTTTTCTTGATAATGTCAGAGAAAATTCAGGTAAACATGGATTAGTATACATTCAAGAGACACTTCTTCATGAAACAGTTAGAGAAAAGGATATTAAGTTAGGAAGTGTATATAAAGGAATTCCAATGATAAAGCAAAGGCTACATCGAAAGAAGGTTCTTTTGGTTCTCGATGATGTTGACAAACTGGAGCAACTAAGGGGTTTGGCTGGAGGACATGATTGGTTCGGTCTGGGCAGCAGAGTAATCATTACCACTCGAGACAAACAGTTGCTAGCAAGTCATGGGATCGAAAGAATATATGAGGTAGATGGGTTAAATAAGGAAGAAGCTCTTCAATTATTGAGGTGTAATGCTTTTAAAAATAACATAGTTGACTCAAGTTACGATGACCTTTTAAACCGTGCAGTAAATTATGCCTCTGGACTTCCATTAGCTTTAGAAGTAGTGGGTTCTAACTTGTATGGAAATTCTATAGAACAATGGAAAGATACATTAGATTGGTATGAAAGGTCTCCTGATGAAAAGATCCAAAACATACTTAAAGTAAGCTTTGATGCTTTGGGGCAAGATGCGCAAAGTGTTTTTCTCGACATTGCTTGCTGCTTTAAAGGATATGGATTAGATGAGCTCGAAAGTATACTTCATGCTCATTATGGCTACTTCATGAATCATCATATCAAAGTGTTGGTTGGAAAATCTCTCATAAAGATTAGTCCCAACCTCTATGAAATCGTTCGACAAGAATCACCAAAAGAGCCAGGGGAACGCAGTAGGTTGTGGTTTCATAAAGATATAATTCATGTTTTTGAAGAAAATTCGTTCCCAATGTCACCTGAAGAAAAAGTAGTAGAATGGAAAGGAGATGAGTTCAAGAAGATGGAAGGCCTCAAAACACTTATTATTGAATCGGATTGGTTTTCTAAAGTTCGCTTTTCTAAAGTTCCTGATCATCTTCCATATAGCTTGAGAGTAATGGATTGGGATGGCTATCCTTCACAGGTTTTACCATCTGATTTTTGTCCAAAGAAACTTTCCATATGCAGGTTAGACCGAGGTTGCCTTACATCATCTGGGTTGTGTGGCTCATTGAAGGCAAGTGAGTTCGTGAATATGAGAGTTTTGTCCCTTTGCTCACTTGATCATTTAACACACATACCCGACGTATCCAGTCTCCTGAATTTAGAACAACTTGACTTTTCAGGTTGTAGGAATTTAATTTCAATTCACGGATCCGTTGGGTTCTTGAATAAACTCAAAATCTTGAGTGCTAGATCTTGTAGAAAGCTCAAGAGTTTTCCACCCATAAGGTTGACCTCTCTTCAACAACTGGAACTTTCAGACTGTCGTAGTCTCGAAATGTTTCCTGAAATATTAGGAGAGATGGGAAAGATAACAGAGCTTATTATCTATAGCACTGGTATAAAAGAATTGCCATCTTCATTTCAATATCTCACTGGGCTTCTTGCATTAGAATTTTTTGATTCACTGCTTAGTTTACCAAGTAGCATTGTCATGATGCCAAAATTGTCACAGATTACTTTTGAAGATTGTCGTTTATTGCCAAATCAGAATGACAATTTGAGTTCCATGGCGTCTTCAAACGTAGAAAAACTTACGCTTACTGACTGCGACCTGTCAGATGATATTCTTCAAATAGGTCTCAGGTGGTTTGCTAATGTCAAAACATTAGACCTATCGAAGAGTAATTTCACAATTCTTCCCGAGTGCATCAAAGAATGTCACTTTTTAAGGTACCTTTGTTTGGATGATTGCGAGTGTCTTCGAGAAATTAGAGGGGTTCCGCCAAATTTAGAAACTTTGACTGCATGTTGGTGTGGGCCATTGACTTCCTCAAGTGGAAGCAAGCTACTGAGTCAGCAGGAACTGCATGAGGCCGGAGGCACCGATTTTTGTTTTTGGGGAACTCCAGAGATTCCGGAGTGGTTTGACCACCGAAGCAAGGGTCGGTCAATTTCATTCTGGTTTCGTAACAAGATCCCTTCCATAGCTCTCTTCGTTGCTAATAAATCACACATCGAATTTCTTCTACCCAAGCTGATCATCAATGGCCATACATGTAGTACTGATGAGGATATGTATTTCCAGAGGATAATGCCGAATCATACGCATCTATATGACATTGAACGGAACCTCAAATATAATATGGACGAAGCACTTTCAAAAAATGAATGGATCCATGCCGAGGTTACGCATGACGTGATTTCTGAGGTTGATGACGTGATTTCTGAGGATGACGAGCACGATATAGAAATTGGAATC

Protein Sequence

>Glyur006542s00044996.1
RRFTYDVFISFRGSDTRYGFTGNLYKALSDRGIHTFFDDRELHGGEEITTSLFKAIEESWVSIPVFSSNYASSSFCLDELVHIMECFKAEERLVLPVFYDLDPSHVRHQTGSFGEAMDKHVARFQNNTDDMERLRKWKMALTQAANLSGHHFKHGNEYEHDFIGKIVEVVFDRTNHAPLHVANHPVGLGSRVQQVRLLLDVGSDDRVLMVGIHGIGGVGKTTLTRAIYNSMIGQFEGLCFLDNVRENSGKHGLVYIQETLLHETVREKDIKLGSVYKGIPMIKQRLHRKKVLLVLDDVDKLEQLRGLAGGHDWFGLGSRVIITTRDKQLLASHGIERIYEVDGLNKEEALQLLRCNAFKNNIVDSSYDDLLNRAVNYASGLPLALEVVGSNLYGNSIEQWKDTLDWYERSPDEKIQNILKVSFDALGQDAQSVFLDIACCFKGYGLDELESILHAHYGYFMNHHIKVLVGKSLIKISPNLYEIVRQESPKEPGERSRLWFHKDIIHVFEENSFPMSPEEKVVEWKGDEFKKMEGLKTLIIESDWFSKVRFSKVPDHLPYSLRVMDWDGYPSQVLPSDFCPKKLSICRLDRGCLTSSGLCGSLKASEFVNMRVLSLCSLDHLTHIPDVSSLLNLEQLDFSGCRNLISIHGSVGFLNKLKILSARSCRKLKSFPPIRLTSLQQLELSDCRSLEMFPEILGEMGKITELIIYSTGIKELPSSFQYLTGLLALEFFDSLLSLPSSIVMMPKLSQITFEDCRLLPNQNDNLSSMASSNVEKLTLTDCDLSDDILQIGLRWFANVKTLDLSKSNFTILPECIKECHFLRYLCLDDCECLREIRGVPPNLETLTACWCGPLTSSSGSKLLSQQELHEAGGTDFCFWGTPEIPEWFDHRSKGRSISFWFRNKIPSIALFVANKSHIEFLLPKLIINGHTCSTDEDMYFQRIMPNHTHLYDIERNLKYNMDEALSKNEWIHAEVTHDVISEVDDVISEDDEHDIEIGI

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06542	4	4568	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006542s00044996.1	PF01582.15	TIR	7	142	2.50E-36
Glyur006542s00044996.1	PF00931.17	NB-ARC	201	445	6.10E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.273
SRR1783600	control	0.248
SRR1783602	moderate drought stress	0.743
SRR1811619	moderate drought stress	0.976

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.382
DRR006520	Root Summer glycyrrhizin high producing strain	20.404
DRR006521	Root Winter glycyrrhizin high producing strain	0.074
DRR006522	Root Winter glycyrrhizin high producing strain	0.036
DRR006523	Root Summer glycyrrhizin low producing strain	46.732
DRR006524	Root Summer glycyrrhizin low producing strain	46.960
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.271
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.969

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.480
SRR2868004	Drought Stress (root)	7.203
SRR2967015	Control (root)	4.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.538
SRR9715740	Leaf	5.121
SRR9715741	Leaf	7.935
SRR9715739	Root	0.923
SRR9715742	Root	7.519
SRR9715743	Root	5.778

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.496
SRR8749028	MeJA induced 9h	3.607
SRR8749029	MeJA induced 9h	1.705
SRR8749030	Uninduced	1.269
SRR8749031	Uninduced	0.756
SRR8749032	Uninduced	0.537

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.824
SRR8400027	Control - Root	8.073