Gene detail

Gene detail information of Glyur006540s00047451

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30360.1	1.00E-138	SOS3-interacting protein 4
NR	KEH34441.1	0	CBL-interacting kinase [Medicago truncatula]
COG	YP_007468874.1	3.00E-35	serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|O22932\|CIPKB_ARATH	0	CBL-interacting serine/threonine-protein kinase 11
trEMBL	tr\|A0A072UYE6\|A0A072UYE6_MEDTR	0	CBL-interacting kinase {ECO:0000313\|EMBL:KEH34441.1}

Sequence

Transcript Sequence

>Glyur006540s00047451.1
ATGCCGGAGATCGAACAGACGGCGGAGGTAACCGCCTTGTTTGGGAAATACGAGTTGGGCAGGGTCCTGGGTTGCGGCGCGTTCGCGAAGGTGCACTACGCGCGCAACATTCAAACGGGGCAGAGCGTGGCAGTGAAGATCATCAACAAGAAGAAGCTCGCCGGAACAGGACTAGCCGGCAACGTGAAGCGCGAGATAAGCATCATGAGCCGTCTCCACCACCCCCACATCGTGGGTCTCCACGAGGTCCTCGCAACGAAGACGAAGATCTTCTTCATCATGGACTTCGTTCGCGGCGGCGAGCTTTTCGCGAAGATCGCAAAGGGTAGATTCGNCGAGGATCTCAGCCGTCGATACTTCCACCAGTTGATCTCCGCCGTCGGGTACTGCCACTCTCACGGTGTTTTCCACCGCGATCTCAAGCCGGAGAATCTCCTCCTAGACGACAACGGGNATTTGAAGGTCTCTGATTTCGGGTTGAGCGCCGTCAGGGATCAGATCCGACCCGACGGGCTTCTCCACACACTTTGCGGCACCCCTGCTTACGTGGCGCCGGAGATCCTCGCGAAGAAAGGGTACGATGGTGCTAAGGTTGACGTTTGGTCNTGCGGCGTCGTTTTGTTCGTTCTCGCTGCTGGGTACCTTCCCTTCAACGACCCGAATCTNATGGTCATGTATCGGAAAATCTACAAGGGCGAATTCCGGTGTCCCCGGTGGATGTCGCCGGATCTCCGGCGGTTCCTGTCCCGGTTACTCGACACCAACCCGGAAACCCGGATCACCGTCGACGGGATGANCCGGGACCCGTGGTTCAGGAAGGGCTACAAGGAGATAAAGTTTCACGAGGAATATGGGTCTGTGTCTGGGTTAGGGTTCGGGTCGAAGGGTGACGGGGAGGAGGTGTTGGATTTGAACGCGTTCGATATCATATCGTTTTCTTCGGGTTTGGACCTGTCCGGGTTGTTCGGGGAATCGGGCGGGTCGGAGTGGTTGGTGCTGAGTGACTCGCCGGAGAGGATTCTGGAGGTGGCGGAGGAGGTGGGAGCGGCGGAGGGGATGGCGGTGAGGTGGAAGAAGGAATGCGGGGTGGAGTTGGAAGGGCTGAATGGTAATTTCGCGATTGGGATTGAAGTTTACCGGTTGACGGCGGAGATGTCGGTGGTTGAGGTAAATAGGAGGGGCGGCGACGCCGTGGCCTTTGGGAATATGTGGGATAGTAAGCTCAAGCCTCTGCTGCTAGGCGGTGCGTCGACGTCGCATCAGCAGGAACAGGAACCGGACTCGCAGGTTGCCGGTGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06540	921	2222	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006540s00047451.1	PF00069.20	Pkinase	17	271	5.30E-69
Glyur006540s00047451.1	PF03822.9	NAF	303	356	6.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.456
SRR1783600	control	3.617
SRR1783602	moderate drought stress	3.760
SRR1811619	moderate drought stress	3.861

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.419
DRR006520	Root Summer glycyrrhizin high producing strain	6.385
DRR006521	Root Winter glycyrrhizin high producing strain	1.113
DRR006522	Root Winter glycyrrhizin high producing strain	0.980
DRR006523	Root Summer glycyrrhizin low producing strain	3.719
DRR006524	Root Summer glycyrrhizin low producing strain	3.912
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.570

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.627
SRR2868004	Drought Stress (root)	6.021
SRR2967015	Control (root)	5.497

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.980
SRR9715740	Leaf	15.703
SRR9715741	Leaf	36.881
SRR9715739	Root	4.676
SRR9715742	Root	9.133
SRR9715743	Root	7.776

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.112
SRR8749028	MeJA induced 9h	0.454
SRR8749029	MeJA induced 9h	0.580
SRR8749030	Uninduced	0.193
SRR8749031	Uninduced	0.057
SRR8749032	Uninduced	0.232

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.167
SRR8400027	Control - Root	9.613