Gene detail

Gene detail information of Glyur006530s00044709

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40230.1	2.00E-87	HXXXD-type acyl-transferase family protein
NR	XP_004500505.1	0	PREDICTED: taxadien-5-alpha-ol O-acetyltransferase-like [Cicer arietinum]
Swissprot	tr\|Q94CD1\|HHT1_ARATH	7.00E-33	Omega-hydroxypalmitate O-feruloyl transferase
trEMBL	tr\|G7JBV7\|G7JBV7_MEDTR	0	HXXXD-type acyl-transferase family protein {ECO:0000313\|EMBL:AES71197.1}

Sequence

Transcript Sequence

>Glyur006530s00044709.1
ATGGGAAGTTCAGTGCGTGTGAAAGAAGCTGTGGTAGTGACCCCTTCGGAGCCCACACCAAGTGGTGTCCTGTTACTCTCCGCACTCGATTCCCAACTCTTCCTTCGCTTCACCGTCGAGTACCTCCTCGTGTACAGGCCCGCCCCGGGCCTGCACGACCAGGTGGCAACCACGGCTCGCTTGAAAGCAGCATTAGCCAAAGCTTTGGTTCCTTATTACCCATTGGCAGGGAGGGTCAGGCCCAGGCCCGATGGTGCAGGCCCGGGCCTCGAGGTTTTGTGCAAAGCCCAGGGTGCGGTTTTCATCGAAGCCTCTACGGATTGCTACACCGTTAACGACTTCGAAAGAGCACCACCCAAAACGGTTACTCAATGGAGGAAGCTCTTGTCGTTTTACGTCCCCGACGTTCTCAACGGATCGCCGCCGCTTGTAATTCAGCTTACGTGGCTCGCCGACGTCAACCACTGCATAATGGACGGAATCGGAAGCGCCAATTTTCTCAACCATCTTGCGGAATTGGCTTCAGGGAAACGCGGTGGTGGTCCTAAACCGAAGCCCGTTTGGGATCGCCACCTTCTCAACCCACCTGCCGGCGAGGATTTGTTCAACCGGGTCCCGGATCTCTGCGGGTTCATGAATAAGGTCACGAGCTGTCTCAAGCCGACTTGCATTGTGTTCGACCGGCGGCGACTCGGCGAGCTAAAGGGGTTTGGCGCGGCGAACGAGTCAACCAGGCGAGTCGTCGAATTACACGTCGTTCGAGGTGCTCGCGGCGCACGTGTGGAGGAGCTGGGCAAGGGCAATGGGGTTCCCTCCGAACCAGACGCTGAAGCTGCTGCGGGTCTACCCGACGGGTATTACGGGAACGCGTTTGTTCTGGGTTGTGCGCAGAGCAGTGCGAGGGAGCTTGGGGAGAGAGGTGCCGGGGCGAAGGAGAGGGTGGATAGTGAGCACGTGAGGAGGGTGACTGAGTTAGTGTCCGAGTCGAGAGCGTGTCCTGACTCGGTGGGAGTGTTGATATTGTCGCAGTGGTCAAGGTTGGGTCTTGAGAGGGTCGAGCTTGGAATGGAGAAGCCGGTGTTTGTGGGGCCCATTTGCTGCGATAGGTACTGTTTGTTCTTGCCGGTGAAGGGTGAAAGGGACAGCGTCAAGGTCGCGGTGGCTGTTCCCGCCACCGCCGTTGACAATTACCACCGTTACCTCAGGGAATCGCATTTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06530	3192	4520	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006530s00044709.1	PF02458.10	Transferase	4	199	3.00E-33
Glyur006530s00044709.1	PF02458.10	Transferase	282	393	0.00012

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.980
SRR1783600	control	1.007
SRR1783602	moderate drought stress	0.600
SRR1811619	moderate drought stress	0.634

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.040
DRR006520	Root Summer glycyrrhizin high producing strain	4.820
DRR006521	Root Winter glycyrrhizin high producing strain	0.436
DRR006522	Root Winter glycyrrhizin high producing strain	0.434
DRR006523	Root Summer glycyrrhizin low producing strain	2.703
DRR006524	Root Summer glycyrrhizin low producing strain	2.428
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.939

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.258
SRR2868004	Drought Stress (root)	2.255
SRR2967015	Control (root)	3.495

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.728
SRR9715740	Leaf	0.567
SRR9715741	Leaf	0.200
SRR9715739	Root	4.544
SRR9715742	Root	2.400
SRR9715743	Root	3.042

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.263
SRR8749028	MeJA induced 9h	0.454
SRR8749029	MeJA induced 9h	0.732
SRR8749030	Uninduced	0.253
SRR8749031	Uninduced	0.031
SRR8749032	Uninduced	0.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.042
SRR8400027	Control - Root	6.189