Gene detail information of Glyur006518s00045745 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12090.1 | 1.00E-92 | tetraspanin6 |
| NR | XP_002312022.2 | 2.12E-161 | hypothetical protein POPTR_0008s04120g [Populus trichocarpa] |
| Swissprot | tr|Q9C7C1|TET6_ARATH | 8.00E-126 | Tetraspanin-6 |
| trEMBL | tr|B9HLM8|B9HLM8_POPTR | 8.00E-162 | Uncharacterized protein {ECO:0000313|EMBL:EEE89389.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06518 | 2354 | 4923 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006518s00045745.1 | PF00335.15 | Tetraspannin | 5 | 246 | 1.10E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.185 |
| SRR1783600 | control | 2.063 |
| SRR1783602 | moderate drought stress | 3.094 |
| SRR1811619 | moderate drought stress | 2.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.420 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.596 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.484 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.805 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.417 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.386 |
| SRR2868004 | Drought Stress (root) | 14.960 |
| SRR2967015 | Control (root) | 20.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.924 |
| SRR9715740 | Leaf | 8.712 |
| SRR9715741 | Leaf | 14.862 |
| SRR9715739 | Root | 0.554 |
| SRR9715742 | Root | 6.486 |
| SRR9715743 | Root | 5.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.521 |
| SRR8400027 | Control - Root | 2.933 |