Gene detail information of Glyur006487s00046105 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47140.1 | 3.00E-70 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH39093.1 | 7.69E-111 | short-chain dehydrogenase/reductase [Medicago truncatula] |
| COG | YP_004861824.1 | 2.00E-39 | short-chain alcohol dehydrogenase-like protein [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|Q94K41|SDR3B_ARATH | 1.00E-86 | Short-chain dehydrogenase reductase 3b |
| trEMBL | tr|A0A072VCB0|A0A072VCB0_MEDTR | 3.00E-111 | Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:KEH39093.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06487 | 2930 | 3797 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006487s00046105.1 | PF00106.20 | adh_short | 2 | 151 | 9.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.130 |
| SRR1783600 | control | 0.140 |
| SRR1783602 | moderate drought stress | 0.755 |
| SRR1811619 | moderate drought stress | 0.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.192 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.245 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 127.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 126.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.442 |
| SRR2868004 | Drought Stress (root) | 3.912 |
| SRR2967015 | Control (root) | 2.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.131 |
| SRR9715740 | Leaf | 8.763 |
| SRR9715741 | Leaf | 6.981 |
| SRR9715739 | Root | 0.057 |
| SRR9715742 | Root | 0.100 |
| SRR9715743 | Root | 0.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.322 |
| SRR8749028 | MeJA induced 9h | 0.207 |
| SRR8749029 | MeJA induced 9h | 0.216 |
| SRR8749030 | Uninduced | 0.011 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.180 |
| SRR8400027 | Control - Root | 0.469 |