Gene detail information of Glyur006460s00044915 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72190.1 | 4.00E-81 | D-isomer specific 2-hydroxyacid dehydrogenase family protein |
| NR | XP_006577809.1 | 2.27E-126 | PREDICTED: uncharacterized protein LOC100785085 isoform X1 [Glycine max] |
| COG | YP_006443360.1 | 2.00E-35 | lactate dehydrogenase-like oxidoreductase [Anaerobaculum mobile DSM 13181] |
| Swissprot | tr|Q9S7E4|FDH_ARATH | 4.00E-24 | Formate dehydrogenase, mitochondrial (Precursor) |
| trEMBL | tr|K7KJD4|K7KJD4_SOYBN | 8.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G12143.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06460 | 3462 | 5678 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006460s00044915.1 | PF02826.14 | 2-Hacid_dh_C | 11 | 178 | 2.30E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.048 |
| SRR1783600 | control | 4.457 |
| SRR1783602 | moderate drought stress | 2.475 |
| SRR1811619 | moderate drought stress | 2.919 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.225 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.786 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.460 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.877 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.938 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.324 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.485 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.398 |
| SRR2868004 | Drought Stress (root) | 11.263 |
| SRR2967015 | Control (root) | 11.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.025 |
| SRR9715740 | Leaf | 0.532 |
| SRR9715741 | Leaf | 2.088 |
| SRR9715739 | Root | 1.907 |
| SRR9715742 | Root | 1.623 |
| SRR9715743 | Root | 3.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.114 |
| SRR8749028 | MeJA induced 9h | 2.584 |
| SRR8749029 | MeJA induced 9h | 3.356 |
| SRR8749030 | Uninduced | 1.737 |
| SRR8749031 | Uninduced | 0.575 |
| SRR8749032 | Uninduced | 3.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.609 |
| SRR8400027 | Control - Root | 5.842 |