Gene detail information of Glyur006419s00045269 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G59960.1 | 3.00E-12 | NAD(P)-linked oxidoreductase superfamily protein |
| NR | DAA44290.1 | 1.74E-27 | TPA: putative oxidoreductase, aldo/keto reductase family protein [Zea mays] |
| COG | NP_441722.1 | 7.00E-08 | aldehyde reductase [Synechocystis sp. PCC 6803] |
| Swissprot | tr|E7C196|MER_ERYCB | 4.00E-17 | Methylecgonone reductase |
| trEMBL | tr|A0A096QUG5|A0A096QUG5_MAIZE | 6.00E-28 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GRMZM2G060952_P02} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06419 | 2879 | 3611 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006419s00045269.1 | PF00248.16 | Aldo_ket_red | 9 | 55 | 4.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.922 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.213 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.902 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.684 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.667 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.169 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.376 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.505 |
| SRR2868004 | Drought Stress (root) | 2.083 |
| SRR2967015 | Control (root) | 1.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.000 |
| SRR9715740 | Leaf | 20.371 |
| SRR9715741 | Leaf | 32.458 |
| SRR9715739 | Root | 2.355 |
| SRR9715742 | Root | 7.679 |
| SRR9715743 | Root | 7.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.546 |
| SRR8749028 | MeJA induced 9h | 1.931 |
| SRR8749029 | MeJA induced 9h | 0.677 |
| SRR8749030 | Uninduced | 0.944 |
| SRR8749031 | Uninduced | 0.193 |
| SRR8749032 | Uninduced | 0.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.862 |
| SRR8400027 | Control - Root | 14.631 |