Gene detail

Gene detail information of Glyur006418s00045832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22540.1	0	Major facilitator superfamily protein
NR	XP_003540022.1	0	PREDICTED: probable peptide/nitrate transporter At1g22540-like isoform 1 [Glycine max]
COG	YP_002494545.1	8.00E-36	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q0WP01\|PTR9_ARATH	0	Protein NRT1/ PTR FAMILY 5.10
trEMBL	tr\|I1LNN9\|I1LNN9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA12G00380.1}

Sequence

Transcript Sequence

>Glyur006418s00045832.1
ATGGCGGAACACGACGACGACGTTTTGTTAGAAGGTGGTGGTCCACTGTCCGTGGTGGTTGGGGCGGTTGACTACAGGGGTGTGGAAGTGGCAGAGAGGGTTGCATTNTATGGGATTCAGGGGAACCTAATTTCGTACCTAACAGGGCCACTTCATCAGAGCACCGCCACAGCGGCGGAGAATGTGAATGTGTGGACTGGAACCGCTTCCCTGCTTCCTCTTCTTGGTGCTTTCCTTGCTGACTCTCTTCTTGGACGCTACCGCACTATCCTCTTTGCTTCTCTCATCTACATTCTGGGACTAGGCTTGTTAACACTATCAGCCATGCTTCCTACTCTCATCAAATCTGAGTGCCCAGTTGACAGTGAATTCACATCATGCTCTCCTCGGTTGCAAGTAATCCTGTTCTTTATCTCGCTTTATCTGGTCGCCATTGGACAAGGTGGACATAAGCCATGTGTTCAGGCTTTTGGGGCAGATCAATTCGACGAACGGCACCCTAAGGAGCACAAAGCCAGAAGCTCATTCTTTAATTGGTGGTATTTCACCATGTGTGCAGGTTGCATGGCAACACTNTGGATCTTGAACTANATACAGGACAACCTTAGTTGGGTTCTTGGATTTGGAATCCCCTGTGTTGTAATGACTATTGCATTGCTTGTTTTCTTGCTTGGAACAACAACCTACAGGTTTAACATCCAGGAGCATGACAAGAGCCCCTTTCTCAGAATTAGCCNTGTATTCGTTGCAGCTGTAAGAAATTGGCGAACTAAACTATCGAGCACGGCTATCGAAGAGGAACNCGGTGGAATACTTCCCCATCAAAGTTCTGAACAATTCAACCTTAGTGAGGTGGAAGAAGCAAAGGCAGTACTAAGGCTGGTTCCTATTTGGGCTACAACTCTGGTTTATGCCATTGTGTTTGCTCAAACTCCTACTTTCTTTACCAAGCAAGGGATTACTTTGGATAGAAGATTATTTTCGGGTTTCGATATACCCCCCGCTTCTCTTCAAACGCTTGTGACCCTGGGCATTGTTCTCTTCAGTCCCATCTATGACCGCGTATTCGTGCCAATAGCAAGGGCTGTCACTGGGAAACCCTCAGGCATCACAATGCTGCAAAGAATTGGGACTGGAATTTTTATATCCATTTTTACAGTAGTAATTGCAGCCCTTGTTGAGATGAAAAGACTAAAAACAGCACAAGAGTATGGTCTTGTTGATGATCCTAATGCAACCCTTCCAATGAGTNTATGGTGGTTGATTCCCCAATATTTCTTGTTTGGGGTTTGTGATGTTTTTACCATGGTTGGTCTTCAAGAGTTTTTCTATGACCAGGTTCCAAATGAACTGAGAAGCATGGGTCTTGCTCTCTACTTGAGCATCTTTGGTGTGGGGAGCTTTTTAAGTGGCTTTCTCATTTCTGTGATAGAAAAAGTGACTGGCAAAGATGGACAAGATAGCTGGTTTGCTAACAATCTCAATAAGGCACATCTTGATTACTTCTACTTGCTACTTGCTGGATTCAGTGCAGTGGGATTTACTTTGTTCATTTACTTTGCTAAGTCTTACATTTATAATCACAAAGGAATCTCACGAGTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06418	456	5409	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006857 oligopeptide transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006418s00045832.1	PF00854.16	PTR2	87	259	2.00E-45
Glyur006418s00045832.1	PF00854.16	PTR2	283	462	1.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.464
SRR1783600	control	26.160
SRR1783602	moderate drought stress	17.275
SRR1811619	moderate drought stress	17.622

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.068
DRR006520	Root Summer glycyrrhizin high producing strain	26.834
DRR006521	Root Winter glycyrrhizin high producing strain	22.886
DRR006522	Root Winter glycyrrhizin high producing strain	22.916
DRR006523	Root Summer glycyrrhizin low producing strain	63.763
DRR006524	Root Summer glycyrrhizin low producing strain	63.584
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.151
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.277

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.961
SRR2868004	Drought Stress (root)	63.829
SRR2967015	Control (root)	66.219

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.733
SRR9715740	Leaf	66.663
SRR9715741	Leaf	56.044
SRR9715739	Root	30.210
SRR9715742	Root	25.825
SRR9715743	Root	26.048

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.307
SRR8749028	MeJA induced 9h	22.097
SRR8749029	MeJA induced 9h	12.683
SRR8749030	Uninduced	10.451
SRR8749031	Uninduced	7.140
SRR8749032	Uninduced	6.769

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.157
SRR8400027	Control - Root	46.974