Gene detail information of Glyur006407s00042402 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38120.2 | 7.00E-70 | ARM repeat superfamily protein |
| NR | AES71684.2 | 0 | armadillo/beta-catenin-like repeat protein [Medicago truncatula] |
| trEMBL | tr|G7J7C4|G7J7C4_MEDTR | 0 | Armadillo/beta-catenin-like repeat protein {ECO:0000313|EMBL:AES71684.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06407 | 1161 | 5643 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006407s00042402.1 | PF13251.1 | DUF4042 | 370 | 423 | 1.20E-13 |
| Glyur006407s00042402.1 | PF13251.1 | DUF4042 | 425 | 477 | 2.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.913 |
| SRR1783600 | control | 3.930 |
| SRR1783602 | moderate drought stress | 5.595 |
| SRR1811619 | moderate drought stress | 5.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.972 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.001 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.222 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.938 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.306 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.881 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.247 |
| SRR2868004 | Drought Stress (root) | 12.217 |
| SRR2967015 | Control (root) | 13.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.587 |
| SRR9715740 | Leaf | 2.998 |
| SRR9715741 | Leaf | 4.323 |
| SRR9715739 | Root | 0.708 |
| SRR9715742 | Root | 6.200 |
| SRR9715743 | Root | 4.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.444 |
| SRR8749028 | MeJA induced 9h | 9.417 |
| SRR8749029 | MeJA induced 9h | 1.013 |
| SRR8749030 | Uninduced | 2.303 |
| SRR8749031 | Uninduced | 1.656 |
| SRR8749032 | Uninduced | 1.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.246 |
| SRR8400027 | Control - Root | 15.715 |