Gene detail information of Glyur006376s00042198 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12760.1 | 5.00E-54 | |
| NR | XP_004500720.1 | 5.19E-115 | PREDICTED: RPA-interacting protein-like [Cicer arietinum] |
| trEMBL | tr|I1K6X6|I1K6X6_SOYBN | 3.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G00500.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06376 | 279 | 1929 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006376s00042198.1 | PF14766.1 | RPA_interact_N | 56 | 79 | 1.50E-08 |
| Glyur006376s00042198.1 | PF14767.1 | RPA_interact_M | 93 | 189 | 2.50E-13 |
| Glyur006376s00042198.1 | PF14768.1 | RPA_interact_C | 205 | 286 | 4.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.850 |
| SRR1783600 | control | 8.013 |
| SRR1783602 | moderate drought stress | 9.520 |
| SRR1811619 | moderate drought stress | 9.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.626 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.543 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.198 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.066 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.616 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.202 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.229 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.133 |
| SRR2868004 | Drought Stress (root) | 10.873 |
| SRR2967015 | Control (root) | 12.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.519 |
| SRR9715740 | Leaf | 4.419 |
| SRR9715741 | Leaf | 4.544 |
| SRR9715739 | Root | 1.801 |
| SRR9715742 | Root | 3.503 |
| SRR9715743 | Root | 3.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.739 |
| SRR8749028 | MeJA induced 9h | 12.380 |
| SRR8749029 | MeJA induced 9h | 15.934 |
| SRR8749030 | Uninduced | 7.007 |
| SRR8749031 | Uninduced | 8.157 |
| SRR8749032 | Uninduced | 6.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.488 |
| SRR8400027 | Control - Root | 8.430 |