Gene detail

Gene detail information of Glyur006361s00043164

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74110.1	3.00E-144	cytochrome P450, family 78, subfamily A, polypeptide 10
NR	KHN44434.1	0	Cytochrome P450 78A4 [Glycine soja]
COG	YP_008148740.1	4.00E-29	hypothetical protein SCE1572_11475 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9LMX7\|C78A5_ARATH	2.00E-175	Cytochrome P450 78A5
trEMBL	tr\|K7LS02\|K7LS02_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G37110.2}

Sequence

Transcript Sequence

>Glyur006361s00043164.1
ATGCTTCTAAGTATACTTGTTAACACCCTCTCTTCTTCTTGCTTCTGGTCACTCGTTACTCTTTTTCTCTCCACATCCCTCGCCCTTCTCGCTATCTCCCTCAACCACTGGCTCATCCCCGGAGGTTTCGCATGGCGTAACTACCACAACCGTTACAACAACAACAACAACAAAAAAGAACAAAAAGTACGCCTCCCTGTTGGGCCTACGGGATGGCCCATATTGGGATCTCTTCCCGAAATGGGCTCACTGGCCCACAGAAAACTCGCCGCGATGGCCACGTCACTAAACGCGAAAAAGCTCATGTCGTTTAGCCTTGGATCCAACCGCGTCGTCGTGAGTTCCCACCCTGACACCGCGAGAGAGATCCTGTGCGGTTCGTCTTTCTCGGACCGTCCCGTGAAAGAATCGGCACGCGTGTTGATGTTCGAGCGTGCCATTGGTTTCGCTCCATACGGTGCGTATTGGCGCCACCTTCGAAAAGTGGCCACTACTCACATGTTCTGTCCCAAGAGAATCTCTGCTTTGGAGAGTTTACGCCAACACGTGGCTTCTGAAATGGTGGTGAAAACACAGAAGGAGATGGTGGAGAAAGGGGTTGTGGAGGTGTTGCATGAAGGGTCTCTGGGCAATGTTTTGGAGAGTGTGTTTGGTGGTTCTTTGGGAACAGAGATGAAGGAGGTGTTGGGGGATATGGTTAAGGAAGGGTATGAGTTGATTTCTATGTTTAATTGGGAGGACTATTTTGCTTTTAAGTTTTTGGACTTTAATGGGGTCAAGAGAAGGTGTCACAAATTGGCGGGTAAGGTCAATGTTGTGGTGGGTCAAATTGTGGAAGAGAGGAAAACATCTGGAGAGTTTGTTGGAAAGGATGATTTTCTTAGTGCTCTGTTATCGTTGCCTGAGGAGGAAAGGTTGGGTGATTCGGATATAGTGGCCATTTTGTGGGAAATGATATTCCGTGGAACAGACACGGTTGCTATACTCCTCGAATGGACTATGGCCATGATGGTGTTGCANCCAGACGTTCAGACAAAAGCACGCGAAGAGATCGACACGTGCATCGGCCAAGACGGTCACGTGCGAGACTCAGACATTCCCAACCTCCCATACCTCCAAGCCATAGTGAAGGAGGTTTTCCGTTTGCACCCACCAGGCCCATTGCTATCATGGGCCCGTCTCGCAATCCACGACGTCCACGTGGGCAAGATCTTCGTGCCAGCTGGCACGACAGCAATGGTCAACATGTGGGCCATAACACATGACTCGTCTATCTGGGAANACCCATGGGCCTTTAAGCCCGAACGGTTCATGAAAGAAGACGTGTCCATCATGGGTTCAGATATGAGACTCGCACCGTTCGGTGCGGGTCGCAGGGTGTGCCCGGGTAAAGCATTGGGCTTAGCCACCGTTCATCTCTGGCTCGCACAGCTTCTTCACCGCTTCATTTGGCTTCCTGTGCAGCCCGTGGATCTTTCGGAATGCCTTAAGCTCTCCCTTGAAATGAAAAAGCCTTTACGATGCCAAGCGATTTGCAGGGACAAGACATTATAAGCTAACTCTCTTGAACTCAATTAGGTGAATTTGCAATAAAGAATATCGTTAGTCCTATCGATGGGCCTGTTGTGTCACTGTGTGTAATATTAATATTATAAAATACTAATAAGTACGTATAATATACTAGTTGAGTTCAAGGCGGTCCCATGAAATGGGGCTAATTAAGTAGTGAACTCAGAAGAGAACTGTGTGTCTCTTTTGAAACTACAATGTACGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06361	140	3172	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP78A10

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006361s00043164.1	PF00067.17	p450	66	494	5.60E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.232
SRR1783600	control	32.244
SRR1783602	moderate drought stress	26.186
SRR1811619	moderate drought stress	25.819

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	153.787
DRR006520	Root Summer glycyrrhizin high producing strain	149.667
DRR006521	Root Winter glycyrrhizin high producing strain	0.593
DRR006522	Root Winter glycyrrhizin high producing strain	0.612
DRR006523	Root Summer glycyrrhizin low producing strain	41.960
DRR006524	Root Summer glycyrrhizin low producing strain	42.039
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.355
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.992

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	134.292
SRR2868004	Drought Stress (root)	77.500
SRR2967015	Control (root)	139.018

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.649
SRR9715740	Leaf	1.221
SRR9715741	Leaf	3.595
SRR9715739	Root	127.605
SRR9715742	Root	95.838
SRR9715743	Root	106.043

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.040
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.057
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.707
SRR8400027	Control - Root	42.532