Gene detail information of Glyur006352s00044644 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20130.1 | 9.00E-54 | plastid transcriptionally active 14 |
| NR | KHN47735.1 | 8.83E-79 | Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Glycine soja] |
| trEMBL | tr|I1MGT8|I1MGT8_SOYBN | 3.00E-79 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16830.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06352 | 4746 | 5720 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006352s00044644.1 | PF09273.6 | Rubis-subs-bind | 65 | 117 | 6.60E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.190 |
| SRR1783600 | control | 6.294 |
| SRR1783602 | moderate drought stress | 9.721 |
| SRR1811619 | moderate drought stress | 9.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.657 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.807 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.004 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.023 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.469 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.888 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.452 |
| SRR2868004 | Drought Stress (root) | 6.822 |
| SRR2967015 | Control (root) | 11.962 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.316 |
| SRR9715740 | Leaf | 42.055 |
| SRR9715741 | Leaf | 26.930 |
| SRR9715739 | Root | 0.836 |
| SRR9715742 | Root | 4.654 |
| SRR9715743 | Root | 2.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.486 |
| SRR8749028 | MeJA induced 9h | 12.295 |
| SRR8749029 | MeJA induced 9h | 9.083 |
| SRR8749030 | Uninduced | 7.119 |
| SRR8749031 | Uninduced | 3.342 |
| SRR8749032 | Uninduced | 6.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.066 |
| SRR8400027 | Control - Root | 8.081 |