Gene detail

Gene detail information of Glyur006352s00044643

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G57430.1	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004487896.1	PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q7Y211\|PP285_ARATH	Pentatricopeptide repeat-containing protein At3g57430, chloroplastic (Precursor)
trEMBL	tr\|G7IND6\|G7IND6_MEDTR	PPR containing plant protein {ECO:0000313\|EMBL:AES65119.2}

Sequence

Transcript Sequence

>Glyur006352s00044643.1
ATGTCTTCCTATCTTGGTCACACCCAACTCCTCCTCCCTTTTACTTCTTCCCTCCAAAACCACACTCTTCCCACTCCCAAACAGTACCCTCCTCCTCCACCCTCCGCACTCGCCACCGCCAACGCCGCCAGCGTCGCCGCAGAACCCCGTTCTCCTTCCGCATGGATCGACCACCTTCGCTTCCAAGCCCAATCCTCCTCCTTCCACGAAGCCATCTCCACCTACACCGACATGGTCGCCGCCGGCGTAACCCCNGACAACTTCGCCTTCCCCGCCGTCCTGAAAGCCGCCGCCGGCGTCCACGACCTTAACCTCGGGAAACAGATCCACGCCCACGTCATCAAATTCGGCCACTCCTCCTCCGTCGCCGCCGTCGCCAACTCCCTCGTCAACATGTACGGCAAGTGCGGCGACCTCGACGGCGCGCGCCACGTGTTCGACAAAATCCCCAACCGGGACGACGTCTCGTGGAACTCCATGATCGCCGCCACGTGTCGGTTCGAGGAGTGGGATCTCTCCCTGCACCTCCTCCGTCACATGCTATCAGAAAACGTGGGNCCCACCTCGTTCACCTTGGTCAGCATCGCCCACGCGTGTTCCAACCTTCGCGACGGATTGCGACTCGGGAAGCAAGTACACGCTTACACGCTTAGAAACGGTGACATGAGAACAACGTTCACCAACAACGCCTTGGTAACAATGTATGCAAAATTAGGTAGAGTTGATGAAGCCAAGGCTTTGTTTAATTCCTTTGATGACAAAGTCAAAGACTTGGTGTCTTGGAACACCGTTATTAGTTCTCTCTCTCAAAATGANAGATTTGAGGAGGCATTGTTGTATCTAGGTTTTATGCTTCAATGTGGTGTTAGGCCTGATGGGGTTACCTTGGCAAGTGCTCTCCCTGCATGCTCTCATCTAGAGATGTTGGGTATTGGAAAGGAGATGCATTGCTATGCCTTAAGGAATGCGGATTTGATTGAGAATTCGTTTGTTGGGAGTGCTTTGGTTGACATGTATTGCAATTGCAAGCAAGCTGAGAAGGGTAGGTTGGTTTTTGATGGGATCTTTGAAAGGACAGTGGCGGTTTGGAATGCCATGATTGCTGGTTATGTGCGCAATGANCTTGATTTTGATGCTATTGAGCTCTTCATTGAGATGGCTTTCGAGTCGGGTTTGAGTCCGAATTCAACGACTCTGTCGAGTGTTTTGCCTGCTTGTGTGCGGTGTGAGGCATTCTTGGACAAAGAAGGGATCCATGGCTATGTTGTGAAAATGGGCTTTGAGAAGGATAAGTATGTGCAGAATGCACTGATGGACNTGTATTCCAGAATGGGGAGGATAGAGGTTTCGAAGAGCATATTTGGCAGCATNGGTAGGAGAGATATAGTGTCTTGGAACACAATGATCACCGGTTGTGTTGTTTGTGGGCGCCACGAGGATGCGCTTAATCTTCTGCATGACATGCAGAGAGGTCAAGAAGGAGATAAGAGGAGCAACACATTTGGTGATTATTGTGAGGATGATAATGAGAGCATTCCCCTGAAGCCGAATTCGGTGACTCTAATGACGGTGCTTCCTGGTTGTGCTGCCTTGGCAGCGCTGGGTAAAGGGAAAGAGATTCATGCTTATGCTGTTAAACAAATGCTGGCAACTGATGTTGCTGTGGGAAGCGCGCTGGTTGACATGTATGCAAAATGTGGTTGCTTGAACTTGTCTAGGATAGTCTTTGATCAAATGCCTGTAAGAAATGTTATTACTTGGAATGTTCTTATCATGGCTTATGGGATGCATGGGAAAGGGGAAGAAGCTTTGGAGCTTTTCAGAAGAATGGTGGCAGAAGGAGACNGCAATAGGGAAATAAGGCCCAATGAAGTGACCTATATTGCCATTTTTGCTTCTTGTAGTCACTCTGGGATGGTGGATGAAGGCCTTAATTTATTCCATACAATGAAAGCAAACCATGGGATTGAACCCACATCTGACCATTATGCTTGTCTTGTGGACTTGCTTGGCCGATCCGGTCGGATCGAAGAGGCGTATAAACTGGTCAAGACAATGTCATCCAATATGAACAAAGTAGATGCATGGAGTAGCTTGCTGGGTGCCTGTCGGATCCACCAGAATTTAGCAATTGGTGAAATTGCAGCAAGGCACCTATTTGTCTTGGAGCCAAATGTGGCTAGCCATTATGTTCTTTTGTCTAACATATACTCTTCAGCTGGACTTTGGGACCAGGCAATGGATGTTAGGAAGAAAATGAGGGAAATGGGAGTAAGAAAAGAACCTGGCTGTAGTTGGATTGAGCATGGTGATGAGGTTCACAAGTTTTTGGCAGGGGATGCTTCACACCCACAAAGTGAAGAACTCCATGAATATCTTGAAACTCTGTCCCAGAGAATGAAAAANGAGGGATATGTACCTGATACTTCTTGTGTACTTCATAATGTTGATGAGGAAGAGAAAGAAACTATGCTTTGTGGGCATAGTGAGAGACTGGCAATAGCTTATGGCCTTTTAAATANCCCTCCTGGAACTACCATTAGAGTTGCCAAAAACCTTCGGGTTTGCAATGACTGCCATGTTGCCACTAAATTCATATCAAAGGTTGTGGACAGGGAAATCGTTCTTAGAGATGTTAGAAGGTTCCATCATTTCAGAAATGGAACTTGCTCTTGTGGGGATTATTGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06352	1126	3816	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006352s00044643.1	PF01535.15	PPR	127	150	0.019
Glyur006352s00044643.1	PF01535.15	PPR	155	185	0.0071
Glyur006352s00044643.1	PF01535.15	PPR	229	250	0.025
Glyur006352s00044643.1	PF01535.15	PPR	259	289	0.00018
Glyur006352s00044643.1	PF01535.15	PPR	362	386	0.00094
Glyur006352s00044643.1	PF01535.15	PPR	463	490	9.80E-07
Glyur006352s00044643.1	PF13041.1	PPR_2	583	634	7.20E-09
Glyur006352s00044643.1	PF13812.1	PPR_3	661	687	0.069
Glyur006352s00044643.1	PF01535.15	PPR	730	758	0.0063
Glyur006352s00044643.1	PF14432.1	DYW_deaminase	763	886	5.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.361
SRR1783600	control	3.425
SRR1783602	moderate drought stress	3.564
SRR1811619	moderate drought stress	3.574

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.280
DRR006520	Root Summer glycyrrhizin high producing strain	2.235
DRR006521	Root Winter glycyrrhizin high producing strain	1.472
DRR006522	Root Winter glycyrrhizin high producing strain	1.415
DRR006523	Root Summer glycyrrhizin low producing strain	1.577
DRR006524	Root Summer glycyrrhizin low producing strain	1.528
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.935
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.782

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.679
SRR2868004	Drought Stress (root)	3.383
SRR2967015	Control (root)	3.409

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.148
SRR9715740	Leaf	6.369
SRR9715741	Leaf	5.548
SRR9715739	Root	4.941
SRR9715742	Root	6.940
SRR9715743	Root	8.100

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.610
SRR8749028	MeJA induced 9h	2.661
SRR8749029	MeJA induced 9h	1.040
SRR8749030	Uninduced	1.027
SRR8749031	Uninduced	0.455
SRR8749032	Uninduced	0.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.098
SRR8400027	Control - Root	5.424