Gene detail information of Glyur006347s00044979 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G04885.1 | 6.00E-19 | PCF11P-similar protein 4 |
| NR | KEH24979.1 | 6.98E-117 | PCF11P-related protein [Medicago truncatula] |
| Swissprot | tr|Q0WPF2|PCFS4_ARATH | 2.00E-20 | Polyadenylation and cleavage factor homolog 4 {ECO:0000305} |
| trEMBL | tr|A0A072U5F2|A0A072U5F2_MEDTR | 3.00E-117 | PCF11P-related protein {ECO:0000313|EMBL:KEH24979.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06347 | 4997 | 6121 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.800 |
| SRR1783600 | control | 2.830 |
| SRR1783602 | moderate drought stress | 4.201 |
| SRR1811619 | moderate drought stress | 4.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.362 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.123 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.172 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.210 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.485 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.085 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.535 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.857 |
| SRR2868004 | Drought Stress (root) | 10.043 |
| SRR2967015 | Control (root) | 8.872 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.900 |
| SRR9715740 | Leaf | 3.079 |
| SRR9715741 | Leaf | 3.476 |
| SRR9715739 | Root | 2.955 |
| SRR9715742 | Root | 5.860 |
| SRR9715743 | Root | 4.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.797 |
| SRR8749028 | MeJA induced 9h | 7.805 |
| SRR8749029 | MeJA induced 9h | 2.295 |
| SRR8749030 | Uninduced | 2.009 |
| SRR8749031 | Uninduced | 3.497 |
| SRR8749032 | Uninduced | 3.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.864 |
| SRR8400027 | Control - Root | 4.354 |