Gene detail

Gene detail information of Glyur006322s00041935

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11640.1	4.00E-135	serine racemase
NR	XP_003630530.1	0	Serine racemase [Medicago truncatula]
COG	YP_917682.1	4.00E-97	pyridoxal-5'-phosphate-dependent protein subunit beta [Paracoccus denitrificans PD1222]
Swissprot	tr\|Q2PGG3\|SRR_ARATH	2.00E-172	Serine racemase
trEMBL	tr\|G7LI09\|G7LI09_MEDTR	0	Serine/threonine dehydratase serine racemase {ECO:0000313\|EMBL:AET05006.1}

Sequence

Transcript Sequence

>Glyur006322s00041935.1
AAAGATAGTGCGAATGAAAGTAAGGAAGAGAGCCAGTCAGACACCAACAAAAGCTGCGTCCGTGCTGCAGAGCAAACTGCATTTCCAACAAAGTAAGTAGTAAGTTTCGGGTCTTTCATGGGTTCTGAAAAATACACTCCGAGATATTTTCTTAGCAGTTATTGAGGTTGTAATGGCTTGATGGGTTGGGTTCGGCTACTTGATTTTGATTTCAATTTGACTAGTCTTTTATTCTTCTTTGATTGACTGGTTTGGTGATTGACACTCCTGATATGTTTCTCCATACGCGAGTTTAAATTTGAGATAAATAAGGGAATTGGTATTGAAGGCAGTCTCTACTTTAGTATAAAAATTTCAGACACAATAGAACTAACTTAGCCCATGTATGGACACTAATGAATGACTGCCCTTACTAGGTTTCTTAAAAGTGGAATTGGAACATGCTGCTTTTAGTTTGTAATTTTTTTTTTAATATATAGAAAGGAAAGGATATTGCATGTTAATCATGGGACAGACACATCACTAAAATTGTGTTGTTTATCTTCATTTACTTCCAAGATAAATTACTTACATTACATGGAAGAGGAGATCCAAATAAAAAAGGGGAAATATGCTGCTGATATTTCCTCCATAAAGGAAGCACATGCCCGAATCAAATCATTGGTTCTTAAAACTCCAGTCCTGTCCTCCAGCTCTCTGAATGCTATATCAGGAAGGCAGCTGTACTTTAAGTGTGAATGTTTCCAAAAGGGTGGAGCTTTTAAATTTAGAGGTGCCTGCAATGCTGTTTTCTCTCTGGATGATGAAGATGCTTCTAAAGGGGTTGTAACACACAGCAGTGGAAACCATGCTGCTGCGTTGGCTTTGGCAGCAAAACTACGGGGCATNCCTGCATACATTGTTATTCCAAAAAATGCCCCAACTTGCAAAGTTGAGAATGTAAAGCGGTATGGTGGTCGGGTTATCTGGTCTGAAGCCACTATGCAATCAAGGGAGGAAACTGCAAATAAAGTGCGGCAAGAAACTGGTGCTATCTTAATACATCCATATAATGATGGGCGCATATTGAGTGGCCAGGGTACCATATCCTTGGAGCTTCTGGAACAAGCCCCACAAATAGATACGCTTGTGGTACCCATAAGTGGTGGTGGTTTGATATCAGGAGTAGCACTGGCTGCCAAGTCCATCAACCCAGCTATTCGTATTTTGGCTGCTGAACCTAAAGGGGCTGATGATGCNGCACAATCCAAAGCAGCTGGGAGGATAATAACATTGCCTGAGACCAATACTATAGCTGATGGGCTTCGAGCATTTCTTGGAGATTTCACATGGCCTGTAGTACGAGATCTTGTTGAGGACATAATAACTGTGGAAGACAGTGAAATAATAAAAGCCATGAAACTGTGTTTNGAAATTCTTAAGGTTGTTGTGGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGAAACTTTCCAGAAGAGTCCTGCTTGGAAGGATTGCAACCATATAGGAATAGTAGTTTCAGGAGGCAATGTTGATTTGGCCGCAAATGCAGCGTCCGGAATGGCAGTGCATGATGACTGCAAACTGAGGTTTCAGGAGCTTAAGTCAAAGAGAAGCTTCCGGTTCATTGTGTTCAAGATTGAACAACAGCAAGTGGTGGTCGATAAACTAGGAGACCCCTCAGAAAGTTATGATGACTTTATGGCCAGTTTGCCTGCTGATGAATGTCGTTATGCCGTCTATGATTTTGATTTCACAACAGAAGAGAATTGCCAGAAAAGCAAGATCTTCTTCGTTGCATGGTCACCAGATACCTCAAGGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGATAGATTCAAGAGAGAATTGGATGGCATCCAAGTGGAGCTGCAAGCAACTGATCCAAGTGAGATGAGCTTGGACATTGTGAAAGGGCGAGCCCTCTAATTAAGCAGCCCCTCTCTCCCCTTCACTGTTTATGGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06322	2	5260	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12235	SRR	EC:5.1.1.18	Glycine, serine and threonine metabolism	map00260
			Glycine, serine and threonine metabolism	map00260

Gene Ontology

biological_process
GO:0006520 cellular amino acid metabolic process

cellular_component
GO:0005622 intracellular

molecular_function

GO:0003779 actin binding

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006322s00041935.1	PF00291.20	PALP	29	319	7.10E-70
Glyur006322s00041935.1	PF00241.15	Cofilin_ADF	336	458	1.20E-44
Glyur006322s00041935.2	PF00291.20	PALP	32	285	2.20E-56
Glyur006322s00041935.2	PF00241.15	Cofilin_ADF	302	424	1.00E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.462
SRR1783600	control	2.604
SRR1783602	moderate drought stress	2.551
SRR1811619	moderate drought stress	2.705

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.273
DRR006520	Root Summer glycyrrhizin high producing strain	3.737
DRR006521	Root Winter glycyrrhizin high producing strain	3.149
DRR006522	Root Winter glycyrrhizin high producing strain	3.026
DRR006523	Root Summer glycyrrhizin low producing strain	2.372
DRR006524	Root Summer glycyrrhizin low producing strain	2.564
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.192
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.272

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.616
SRR2868004	Drought Stress (root)	7.772
SRR2967015	Control (root)	8.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.748
SRR9715740	Leaf	4.847
SRR9715741	Leaf	5.175
SRR9715739	Root	1.229
SRR9715742	Root	3.047
SRR9715743	Root	2.511

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.706
SRR8749028	MeJA induced 9h	1.511
SRR8749029	MeJA induced 9h	1.653
SRR8749030	Uninduced	1.563
SRR8749031	Uninduced	0.977
SRR8749032	Uninduced	0.606

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.742
SRR8400027	Control - Root	7.041