Gene detail

Gene detail information of Glyur006319s00043634

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16310.1	9.00E-117	Cation efflux family protein
NR	XP_006587254.1	0	PREDICTED: metal tolerance protein 10-like [Glycine max]
COG	YP_006527023.1	6.00E-26	cation transporter [Melioribacter roseus P3M-2]
Swissprot	tr\|Q0WU02\|MTP10_ARATH	4.00E-143	Metal tolerance protein 10
trEMBL	tr\|I1L2V9\|I1L2V9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G21920.1}

Sequence

Transcript Sequence

>Glyur006319s00043634.1
ATGGGGACTGAACTTCAAACTGATTCCTTTGATTACCGAACCGAGCTTCTTTCCCCAGCAATAGCTGCAGAGAATGTGTCTATGGCTAGGCAACCCTCATGGAGGATCAACATGGACGAACATCAGTTGCCAGCAAGGCAAATGGAATCTCATTTTGGCTGTGGATTCTACCTAAGAACATTGAGAAACTTGCAGAGTATTATAAGAGGCAGGGAAGGCTTCTTAAAAGGGTACCAAGAAGTGGATTCATTTACTGATTTGGGCACGTTACCTGGAAACTTAACAGAGGATGAGATGAAGCAACTTGAAAGGAGTGAGAAGGTGGCAATTTATGCATCAAACATAGGGAACATGGTGCTATTTGTAGCAAAAGTTTATGCTTCCATTGAGAGTAGATCTCTGGCTGTGATTGCATCAACTTTGGACTCACTCTTGGATCTCTTGTCTGGATTTATACTTTGGTTCACTGCTCATGCTATGAGCAAACCAGACCATCACCAATACCCCATTGGCAAAAACCGCATGCAACCTGTGGCTCAACCTGAGAGGGATCCTGTGAAAGAAAAGTGGATGATAGGGATTATGGTCACAGCCACCCTGGTAAAAGTTGTGCTCATGACTTACTGTCGCAGGTTCAAGAATGAAATAGTGAGGGCCTATGCTCAGGACCATTTCTTTGATGTCATCACAAACTCAATTGGTCTAGCCACTGCAGTGCTAGCCATCAGATTCTACTGGTGGCTTGACCCTGTTGGGGCCATTGTGATAGCTGTATATACAATCAGTAACTGGGCAAAAACGGTGATGGAGAATGTGTGGTCATTGATTGGCAAATCAGCTCCACCAGAGTACCTTGCAAAGCTAACATATCTTTGTTGGAACCATGACAAGGAGATCAAGCACATTGACACATTGCGAGCCTACACATTTGGGTCCTATTACTTTGTGGAGGTAGACATAGTGGTGTCAGAAGAGATGTCACTTGGTCAAGCACATGACATTGGAGAGACACTTCAGGATAAGCTTGAGAAACTCCCCGAAATTGAGAGAGCCTTTGTTCATGTTGATTTGAACACCACTCATAAGCTTGAACACAAGCAGCTGAGAGTGTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06319	1260	3701	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006319s00043634.1	PF01545.16	Cation_efflux	114	179	6.00E-09
Glyur006319s00043634.1	PF01545.16	Cation_efflux	188	360	1.90E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.163
SRR1783600	control	0.164
SRR1783602	moderate drought stress	0.091
SRR1811619	moderate drought stress	0.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.040
DRR006524	Root Summer glycyrrhizin low producing strain	0.050
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	143.247
SRR2868004	Drought Stress (root)	58.828
SRR2967015	Control (root)	27.972

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.294
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.105
SRR9715739	Root	0.044
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.060
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.109
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.006

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.361
SRR8400027	Control - Root	9.624