Gene detail information of Glyur006266s00044786 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62280.1 | 3.00E-09 | SLAC1 homologue 1 |
| NR | XP_004506270.1 | 2.12E-35 | PREDICTED: S-type anion channel SLAH1-like [Cicer arietinum] |
| Swissprot | tr|Q5E930|SLAH1_ARATH | 2.00E-18 | S-type anion channel SLAH1 |
| trEMBL | tr|G7JEQ3|G7JEQ3_MEDTR | 2.00E-28 | C4-dicarboxylate transporter/malic acid protein {ECO:0000313|EMBL:AES88158.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06266 | 4944 | 5186 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006266s00044786.1 | PF03595.12 | SLAC1 | 3 | 56 | 7.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.665 |
| SRR1783600 | control | 1.760 |
| SRR1783602 | moderate drought stress | 1.786 |
| SRR1811619 | moderate drought stress | 1.562 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.431 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.820 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.131 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.171 |
| SRR2868004 | Drought Stress (root) | 0.777 |
| SRR2967015 | Control (root) | 0.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.920 |
| SRR9715740 | Leaf | 4.106 |
| SRR9715741 | Leaf | 4.926 |
| SRR9715739 | Root | 3.824 |
| SRR9715742 | Root | 7.799 |
| SRR9715743 | Root | 4.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 136.588 |
| SRR8749028 | MeJA induced 9h | 37.793 |
| SRR8749029 | MeJA induced 9h | 101.814 |
| SRR8749030 | Uninduced | 174.348 |
| SRR8749031 | Uninduced | 60.820 |
| SRR8749032 | Uninduced | 104.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.208 |
| SRR8400027 | Control - Root | 2.099 |