Gene detail information of Glyur006245s00044934 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G43610.1 | 4.00E-48 | Spc97 / Spc98 family of spindle pole body (SBP) component |
| NR | XP_007157230.1 | 1.16E-81 | hypothetical protein PHAVU_002G053700g [Phaseolus vulgaris] |
| trEMBL | tr|V7CGI1|V7CGI1_PHAVU | 4.00E-82 | Uncharacterized protein {ECO:0000313|EMBL:ESW29224.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06245 | 11 | 1212 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006245s00044934.1 | PF04130.8 | Spc97_Spc98 | 62 | 191 | 3.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.230 |
| SRR1783600 | control | 4.102 |
| SRR1783602 | moderate drought stress | 3.625 |
| SRR1811619 | moderate drought stress | 3.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.056 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.909 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.532 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.768 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.595 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.596 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.883 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.916 |
| SRR2868004 | Drought Stress (root) | 10.575 |
| SRR2967015 | Control (root) | 12.675 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.106 |
| SRR9715740 | Leaf | 1.554 |
| SRR9715741 | Leaf | 1.390 |
| SRR9715739 | Root | 0.308 |
| SRR9715742 | Root | 4.137 |
| SRR9715743 | Root | 3.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.774 |
| SRR8749028 | MeJA induced 9h | 5.835 |
| SRR8749029 | MeJA induced 9h | 0.651 |
| SRR8749030 | Uninduced | 0.271 |
| SRR8749031 | Uninduced | 0.277 |
| SRR8749032 | Uninduced | 0.101 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.493 |
| SRR8400027 | Control - Root | 13.966 |