Gene detail information of Glyur006214s00043326 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15790.1 | 2.00E-05 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase |
| NR | EEE57848.1 | 9.02E-06 | hypothetical protein OsJ_08472 [Oryza sativa Japonica Group] |
| Swissprot | tr|P35627|CYPX_USEUD | 4.00E-06 | Peptidyl-prolyl cis-trans isomerase |
| trEMBL | tr|B9F341|B9F341_ORYSJ | 3.00E-06 | Putative uncharacterized protein {ECO:0000313|EMBL:EEE57848.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06214 | 5969 | 6448 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.241 |
| SRR1783600 | control | 4.633 |
| SRR1783602 | moderate drought stress | 2.835 |
| SRR1811619 | moderate drought stress | 2.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.785 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.080 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.119 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.350 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.237 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.847 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.856 |
| SRR2868004 | Drought Stress (root) | 0.407 |
| SRR2967015 | Control (root) | 0.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.423 |
| SRR9715741 | Leaf | 0.067 |
| SRR9715739 | Root | 0.518 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.275 |
| SRR8749028 | MeJA induced 9h | 1.584 |
| SRR8749029 | MeJA induced 9h | 0.497 |
| SRR8749030 | Uninduced | 0.383 |
| SRR8749031 | Uninduced | 0.155 |
| SRR8749032 | Uninduced | 0.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.532 |
| SRR8400027 | Control - Root | 0.347 |