Gene detail

Gene detail information of Glyur006184s00045549

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G54070.1	1.00E-69	Ankyrin repeat family protein
NR	KEH37410.1	0	ankyrin repeat plant-like protein [Medicago truncatula]
trEMBL	tr\|A0A072VH05\|A0A072VH05_MEDTR	0	Ankyrin repeat plant-like protein {ECO:0000313\|EMBL:KEH37410.1}

Sequence

Transcript Sequence

>Glyur006184s00045549.1
GGAAATACTTTGGCCAATATGTACCCCTTTATAAGCTGGCAGTGGAAGGTAAATGGAATGCAGCCAAGGCTATGATAGATGCAGACAATGGTCTGCTGAAGGCTGCCATAACAGAAGACAAGTGCACACTGCTGCATATAGCAGCAGGAACAAACCATGTTCATTTTGTTGAGGAGCTGGTTAAATTGTTGGACCCAAATGACATGGAACTGCGAAACACCAATGGGAACACAGCATTGTGCTACGCTGCTGCTGCAACAGGGAACGTGAAAATTGCTGATACAATGGTAAAGAAAAATGGGTGCTTACCACAGATGAGGGGTGCAGAAGGAATGACCCCTCTTTATGTTGCTGTCTTGTATGGAAGAAGTGAGATGGCAAGGTATCTATATAGCCAGAGTGCAGATTTATTGGAAGAAGAGGAACGGAATGCAGTGTTCTTCCTTTGTATCCAGAATGATTTGTACGATTTAGCTTTGCAAATGTTACAAAAAGATTCAGCTCTGGCATTGGTCAGAAATTGGAGCAACGANACAGGCTTACATATCTTGGCTCGAAAGCCTTCTGGCATGCAGCCAACTCCATNTCTCCAACTTGTTGGGTCTCTCTGGGGCGTGCTTCTCAATCTAGTTGGTTGCACGGAAACACTGAGGATAATTATAAATCAACCATCACAAATAACATTTGATGCTACAGAAATTGGAAATTTTCCCTTTGTAGCTGAGCTTATGAGGTCCGACCCGGATTTAATATGGGAACTGGATGACAAAAACCGAAGCATAATTCACATTGCTGTTCTGCACCGCCATTCAAGTATCTTCAGCCTAATACATGAACTAAACTCCTTCAAATATTTTATGGTAGATCTTGAGGATGATGAAGAAAACAATATATTACATTATGCTGCAAAATTAGCACCCTCACACCAGCTTAACTTAATTTCTGGAGCAGCTCTTCAAATGACACATGAATTACTATGGTTTGAGGAGGTGAAGAAATTAATGCTGCCATCAGAAATAGAGAAGAGAAATTCCAGTGGCAAAACTCCTGGTGANATATTTGTGGAGGAGCATAAAGAACTATTGACAAAGGCAGAGTCTTGGACTAAGAGCACAGCTAATAATTGCATGCTTATTTCAACACTCATATCCACAGGAGTATTAACAGCTACATTTTGCATACCTGGTGGCAACAACAAAAACACAGGAACTCCAAACTACTTGCAGAAACCAGCATTCCTNTTATTTGCAGTATCAGATGCAGCTGCACTGATCTCATCTTCAGCATCCATACTGATTTTCTTGTCCATCCTCNCCTCAAGTTATGCAGAGTATGAGTATTTCAAGTCACTTCCCTTTAAGCTACTGTTTGGACTGATTGCACAAATCATATCCATCACAAGCATGATGGTAGCATTCAGTGTTGCCTTCTTCATAACATATTACCATGGTTCAATGTGGGTTTCACATTTTGTTTCAATACTCACATTTCTTCCAATACCCTTGTGCACATTTCTTATATTCCCACTTTGGTCAGATATTATCCACTCTTCTTACTTCTGTATGTCCCTATTTTGGCCAAGAAAGCAAATCCTTAACTAACTAGAAAAAGCAGAGGCCATGTAAAATTTATGTAGTCTCTATAGCCCTACCATGTAGTTGTGAATTGTATGAAATCTTCTTGAAATAATGATTATGCAGGTTTAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold06184	1773	6418	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur006184s00045549.1	PF12796.2	Ank_2	21	114	3.30E-12
Glyur006184s00045549.1	PF13962.1	PGG	343	455	1.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.643
SRR1783600	control	14.349
SRR1783602	moderate drought stress	4.593
SRR1811619	moderate drought stress	4.700

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.301
DRR006520	Root Summer glycyrrhizin high producing strain	1.226
DRR006521	Root Winter glycyrrhizin high producing strain	0.065
DRR006522	Root Winter glycyrrhizin high producing strain	0.063
DRR006523	Root Summer glycyrrhizin low producing strain	0.480
DRR006524	Root Summer glycyrrhizin low producing strain	0.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.759

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.899
SRR2868004	Drought Stress (root)	4.012
SRR2967015	Control (root)	2.661

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.795
SRR9715740	Leaf	15.425
SRR9715741	Leaf	21.058
SRR9715739	Root	3.080
SRR9715742	Root	10.046
SRR9715743	Root	7.771

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.899
SRR8400027	Control - Root	2.075