Gene detail information of Glyur006175s00043131 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25290.1 | 7.00E-132 | DNA photolyases;DNA photolyases |
| NR | KEH29415.1 | 0 | deoxyribodipyrimidine photolyase [Medicago truncatula] |
| COG | YP_001517489.1 | 2.00E-28 | alpha/beta hydrolase [Acaryochloris marina MBIC11017] |
| trEMBL | tr|A0A072UU84|A0A072UU84_MEDTR | 0 | Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KEH29415.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06175 | 102 | 4577 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006175s00043131.1 | PF12697.2 | Abhydrolase_6 | 251 | 391 | 4.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.058 |
| SRR1783600 | control | 2.031 |
| SRR1783602 | moderate drought stress | 1.782 |
| SRR1811619 | moderate drought stress | 1.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.179 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.999 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.112 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.072 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.673 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.148 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.308 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.411 |
| SRR2868004 | Drought Stress (root) | 4.012 |
| SRR2967015 | Control (root) | 5.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 22.685 |
| SRR9715740 | Leaf | 28.382 |
| SRR9715741 | Leaf | 26.316 |
| SRR9715739 | Root | 0.722 |
| SRR9715742 | Root | 3.450 |
| SRR9715743 | Root | 2.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.030 |
| SRR8749028 | MeJA induced 9h | 3.128 |
| SRR8749029 | MeJA induced 9h | 1.469 |
| SRR8749030 | Uninduced | 1.255 |
| SRR8749031 | Uninduced | 0.393 |
| SRR8749032 | Uninduced | 0.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.157 |
| SRR8400027 | Control - Root | 5.070 |