Gene detail information of Glyur006174s00044821 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26990.1 | 1.00E-27 | ENTH/VHS family protein |
| NR | KHM99250.1 | 4.68E-38 | Regulation of nuclear pre-mRNA domain-containing protein 1B [Glycine soja] |
| trEMBL | tr|I1MLE5|I1MLE5_SOYBN | 2.00E-38 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G05720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold06174 | 3090 | 5836 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur006174s00044821.1 | PF04818.8 | CTD_bind | 62 | 106 | 1.00E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.708 |
| SRR1783600 | control | 0.762 |
| SRR1783602 | moderate drought stress | 1.072 |
| SRR1811619 | moderate drought stress | 1.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.946 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.253 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.155 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.084 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.917 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.772 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.826 |
| SRR2868004 | Drought Stress (root) | 1.242 |
| SRR2967015 | Control (root) | 2.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.181 |
| SRR9715740 | Leaf | 0.438 |
| SRR9715741 | Leaf | 0.860 |
| SRR9715739 | Root | 0.340 |
| SRR9715742 | Root | 0.928 |
| SRR9715743 | Root | 0.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.854 |
| SRR8749028 | MeJA induced 9h | 2.263 |
| SRR8749029 | MeJA induced 9h | 2.554 |
| SRR8749030 | Uninduced | 2.132 |
| SRR8749031 | Uninduced | 2.355 |
| SRR8749032 | Uninduced | 0.796 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.115 |
| SRR8400027 | Control - Root | 1.535 |